Showing : hgu133plus2 • reset
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Error: package ‘hgu133plus2’
hgu133plus2
updated 12 months ago by 3.8k • written 12 months ago by • 0
2
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1
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1.9k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.3 years ago by ▴ 20 • written 11.1 years ago by ▴ 340
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
6.3 years ago rahil ▴ 30
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hgu133plus2cdf cant download
normalization hgu133plus2
6.6 years ago marion.ryan • 0
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error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 7.1 years ago by 65k • written 7.1 years ago by ▴ 840
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4
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1.5k
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about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 7.2 years ago by ▴ 10 • written 14.9 years ago by ▴ 430
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HGU133PLUS.db : NA's when using getSYMBOL while uptodate NetAffx database gives gene names
Annotation hgu133plus2
updated 7.2 years ago by 65k • written 7.2 years ago by • 0
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Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
9.1 years ago • updated 7.5 years ago IOM ▴ 20
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5
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2.2k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 8.4 years ago by ▴ 360 • written 8.4 years ago by • 0
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3
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2.4k
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HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
9.1 years ago kanacska ▴ 10
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3
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1.9k
views
Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 9.2 years ago by 65k • written 9.2 years ago by ▴ 10
2
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2
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1.3k
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problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.4 years ago by 65k • written 9.4 years ago by • 0
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2
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2.0k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ★ 13k
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views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
9.6 years ago Guest User ★ 13k
0
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1
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1.6k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 9.7 years ago by ▴ 390 • written 9.7 years ago by ▴ 10
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virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
9.9 years ago Guest User ★ 13k
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5
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2.2k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 9.9 years ago by 50k • written 9.9 years ago by ★ 13k
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3
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2.1k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 10.1 years ago by ★ 8.2k • written 10.1 years ago by ▴ 10
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Problem with geneAnswers, Reactome and some converted affy IDs
hgu133plus2 probe hgu133plus2 probe
10.1 years ago Ulrik Stervbo ▴ 30
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14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 10.3 years ago by ★ 1.6k • written 10.4 years ago by ★ 13k
0
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2.6k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 10.4 years ago by ★ 3.9k • written 10.4 years ago by ▴ 10
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1.9k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 10.4 years ago by ▴ 80 • written 10.4 years ago by ▴ 20
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4
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3.6k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 10.4 years ago by 65k • written 10.4 years ago by ★ 13k
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1.2k
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virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2 virtualArray hgu133plus2 virtualArray
10.4 years ago Guest User ★ 13k
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1.7k
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Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
10.5 years ago Guest User ★ 13k
0
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2
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1.3k
views
segfault ReadAffy cause 'memory not mapped'
Cancer hgu133plus2 affy PROcess Cancer hgu133plus2 affy PROcess
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ▴ 70
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1.6k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.6 years ago b a ▴ 40
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1.0k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.6 years ago b a ▴ 40
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2
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1.7k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 10.7 years ago by ▴ 240 • written 10.7 years ago by ★ 1.1k
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1.7k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 10.8 years ago by 65k • written 10.8 years ago by ▴ 90
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2
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2.0k
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Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 10.8 years ago by 16k • written 10.8 years ago by ▴ 40
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1.5k
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inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
10.9 years ago Ed Siefker ▴ 230
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1.2k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.0 years ago Daniel Emden ▴ 10
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1.2k
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
11.1 years ago Kishor Tappita ▴ 340
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1.2k
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Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 11.4 years ago by ★ 2.0k • written 11.4 years ago by 50k
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4
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views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ★ 13k
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6
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1.6k
views
outlier probes detection
hgu133plus2 hgu133plus2
updated 12.0 years ago by ▴ 210 • written 12.0 years ago by ▴ 240
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3
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1.4k
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.0 years ago Mayte Suarez-Farinas ▴ 510
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1.2k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 240
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3
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1.3k
views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 120
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2
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2.4k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 12.1 years ago by ★ 1.9k • written 12.1 years ago by ▴ 230
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4
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1.3k
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Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
12.1 years ago Fabrice Tourre ▴ 970
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1.2k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.1 years ago by ▴ 830 • written 12.1 years ago by ▴ 20
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1
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965
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 12.2 years ago by 65k • written 12.2 years ago by ★ 13k
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1.3k
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refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 240
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838
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Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
hgu133plus2 hgu133plus2
12.4 years ago Guest User ★ 13k
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4
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1.7k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 12.7 years ago by ★ 7.2k • written 12.7 years ago by ▴ 380
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955
views
a question for SPIA package
Annotation hgu133plus2 Annotation hgu133plus2
updated 12.7 years ago by 21k • written 12.7 years ago by ▴ 380
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1.0k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
12.7 years ago Valerie Obenchain ★ 6.8k
50 results • Page 1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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