Showing : hgu133plus2 • reset
5
votes
4
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3.2k
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
6.3 years ago rahil ▴ 30
4
votes
2
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2.5k
views
error with display of significant nodes using topGO
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 14.6 years ago by ▴ 400 • written 14.6 years ago by ▴ 340
2
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2
replies
1.3k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.3 years ago by 65k • written 9.4 years ago by • 0
2
votes
1
reply
1.9k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.3 years ago by ▴ 20 • written 11.1 years ago by ▴ 340
1
vote
4
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2.2k
views
hgu133plus2cdf cant download
normalization hgu133plus2
6.6 years ago • updated 6.5 years ago marion.ryan • 0
1
vote
3
replies
1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
0
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5
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2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.0 years ago by ▴ 110 • written 11.9 years ago by ▴ 760
0
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1
reply
1.2k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 240
0
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1
reply
1.0k
views
Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 hgu133plus2
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 140
0
votes
1
reply
821
views
justRMA() execution problems
hgu133plus2 hgu133plus2
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 40
0
votes
0
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774
views
missing MAP locations for hgu133plus2 annotation
Genetics Annotation hgu133plus2 Genetics Annotation hgu133plus2
20.1 years ago Srikanth ▴ 40
0
votes
0
replies
692
views
Questions related to processing large dataset in batches
Microarray Normalization Cancer hgu133plus2 probe affy gcrma PROcess Microarray Cancer
19.8 years ago James W. MacDonald 65k
0
votes
5
replies
1.3k
views
Annotation of Affymetrix hgu133plus2 chip
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 430
0
votes
3
replies
1.1k
views
equivalent probes between microarray platforms
hgu133plus2 hu6800 hgu133plus2 hu6800
updated 19.5 years ago by ▴ 10 • written 19.5 years ago by ▴ 140
0
votes
1
reply
14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 10.3 years ago by ★ 1.6k • written 10.3 years ago by ★ 13k
0
votes
0
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1.0k
views
PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
12.7 years ago Iain Gallagher ▴ 930
0
votes
0
replies
836
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation GO hgu133plus2 reposTools Annotation GO hgu133plus2 reposTools
19.1 years ago Gerard Tromp ▴ 10
0
votes
4
replies
1.3k
views
Problems with hgu133plus2
Annotation hgu133plus2 Annotation hgu133plus2
19.2 years ago • updated 19.1 years ago Vitalina Komashko ▴ 30
0
votes
7
replies
1.7k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.0 years ago by ▴ 170 • written 19.0 years ago by ▴ 430
0
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1
reply
1.1k
views
error with plot in simpleaffy
hgu133plus2 probe simpleaffy hgu133plus2 probe simpleaffy
19.0 years ago Larry La Pointe ▴ 60
0
votes
4
replies
905
views
Annotation packages: Which Unigene Release?
hgu133plus2 hgu133plus2
updated 18.9 years ago by ★ 2.9k • written 18.9 years ago by ▴ 310
0
votes
1
reply
986
views
annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
18.9 years ago Yanqin Yang ▴ 250
0
votes
5
replies
1.0k
views
Problems with homology packages
hgu133plus2 hgu133plus2
18.8 years ago Bosotti, Roberta [Nervianoms] ▴ 120
0
votes
2
replies
709
views
adding annotation to exprSet
Annotation hgu133plus2 annotate affy limma Annotation hgu133plus2 annotate affy limma
18.7 years ago Andreas Zankl ▴ 80
0
votes
0
replies
742
views
want to compare hgu133a and hgu133plus2
hgu133a hgu133plus2 affy Resourcerer hgu133a hgu133plus2 affy Resourcerer
18.6 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
761
views
hgu133plus2cdf
hgu133plus2 cdf hgu133plus2 cdf
18.2 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
762
views
annotation hgu133plus2 problem,
hgu133plus2 hgu133plus2
updated 18.2 years ago by 65k • written 18.2 years ago by ▴ 360
0
votes
2
replies
1.5k
views
Package installation problem...
hgu133plus2 cdf hgu133plus2 cdf
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 10
0
votes
2
replies
951
views
annotation
hgu133plus2 mgu74av2 annotate hgu133plus2 mgu74av2 annotate
updated 18.1 years ago by ▴ 300 • written 18.1 years ago by ▴ 320
0
votes
3
replies
2.5k
views
AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
18.0 years ago Wu, Xiwei ▴ 350
0
votes
0
replies
1.2k
views
topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
11.1 years ago Kishor Tappita ▴ 340
0
votes
2
replies
988
views
vector allocation error
hgu133plus2 gcrma hgu133plus2 gcrma
updated 17.8 years ago by ▴ 60 • written 17.8 years ago by ▴ 50
0
votes
0
replies
605
views
alternative CDF
hgu133a hgu133plus2 cdf hgu133a hgu133plus2 cdf
17.9 years ago Tarca, Adi ▴ 570
0
votes
1
reply
533
views
memory problem
hgu133plus2 PROcess hgu133plus2 PROcess
updated 19.2 years ago by ★ 13k • written 19.2 years ago by ▴ 320
0
votes
2
replies
995
views
Question on AffyBatch
hgu133plus2 probe hgu133plus2 probe
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 100
0
votes
1
reply
628
views
Question on read.probematix
hgu133plus2 hgu133plus2
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 100
0
votes
0
replies
671
views
Does anyone have a recent annotation for hgu133plus2 ??
Annotation hgu133plus2 AnnBuilder Annotation hgu133plus2 AnnBuilder
17.3 years ago Marco Zucchelli ▴ 10
0
votes
0
replies
723
views
hgu133plus2 normalization
Microarray hgu133plus2 PROcess Microarray hgu133plus2 PROcess
17.1 years ago Bin Zheng ▴ 10
0
votes
2
replies
1.1k
views
Questions about gene identifiers and probesets regulation
Microarray hgu133plus2 limma Microarray hgu133plus2 limma
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Question about inconsistent gene expression
Microarray Cancer hgu133plus2 probe affy limma gcrma Microarray Cancer hgu133plus2 probe
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 40
0
votes
2
replies
1.1k
views
RMA of CEL files from different chip types
hgu133a hgu133plus2 hgu133a hgu133plus2
updated 16.6 years ago by ▴ 190 • written 16.6 years ago by ▴ 10
0
votes
0
replies
809
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
16.6 years ago Martin Morgan 25k
0
votes
0
replies
724
views
Affymetrix quality control metrics with simpleaffy
GO hgu133plus2 affy GO hgu133plus2 affy
16.5 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 2.0k
0
votes
1
reply
790
views
Mapping Affy probes to OperonID or ensemblID
Cancer hgu133plus2 Cancer hgu133plus2
updated 16.4 years ago by 21k • written 16.4 years ago by ▴ 140
0
votes
3
replies
2.7k
views
How to get ENTREZID from Gene symbol in bioconductor
hgu133plus2 hgu133plus2
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 600
0
votes
3
replies
1.2k
views
Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
15.7 years ago Boel Brynedal ▴ 200
0
votes
0
replies
824
views
dev2bitmap error, 'gs' cannot be found
hgu133plus2 Category hgu133plus2 Category
15.8 years ago Boel Brynedal ▴ 200
0
votes
0
replies
665
views
Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
15.7 years ago Boel Brynedal ▴ 200
0
votes
0
replies
678
views
problem with moe430a version 1.12.0?
hgu133a hgu133plus2 moe430a moe430b rae230b probe hgu133a hgu133plus2 moe430a moe430b
18.0 years ago MARIA STALTERI ▴ 160
50 results • Page 1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it always helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR? Are you starting with…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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