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hgu133plus2
•
reset
5
votes
4
replies
3.2k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf
affymetrix microarrays
hgu133plus2
affy
6.3 years ago
rahil
▴ 30
4
votes
2
replies
2.5k
views
error with display of significant nodes using topGO
GO
hgu133plus2
topGO
GO
hgu133plus2
topGO
updated 14.6 years ago by
Adrian Alexa
▴ 400 • written 14.6 years ago by
Kishor Tappita
▴ 340
2
votes
2
replies
1.3k
views
problem with custom cdf
microarray
affy
hgu133plus2
annotation
cdf
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
tadoktor
• 0
2
votes
1
reply
1.9k
views
topGO expected values showing NA
GO
hgu133plus2
topGO
GO
hgu133plus2
topGO
updated 3.3 years ago by
Doc
▴ 20 • written 11.1 years ago by
Kishor Tappita
▴ 340
1
vote
4
replies
2.2k
views
hgu133plus2cdf cant download
normalization
hgu133plus2
6.6 years ago
marion.ryan
• 0
1
vote
3
replies
1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation
hgu133a
hgu133plus2
probe
Annotation
hgu133a
hgu133plus2
probe
updated 15.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.0 years ago by
Andrew Yee
▴ 350
0
votes
5
replies
2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hu6800
u133x3p
hgu133a
hgu133b
hgu133plus2
updated 8.1 years ago by
alexvpickering
▴ 110 • written 12.0 years ago by
Voke AO
▴ 760
0
votes
1
reply
1.3k
views
error with affycomp package
hgu133plus2
affycomp
hgu133plus2
affycomp
updated 12.0 years ago by
James W. MacDonald
65k • written 12.0 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
1.0k
views
Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2
hgu133plus2
updated 15.2 years ago by
Marc Carlson
★ 7.2k • written 15.2 years ago by
dorothyc
▴ 140
0
votes
1
reply
824
views
justRMA() execution problems
hgu133plus2
hgu133plus2
updated 20.2 years ago by
James W. MacDonald
65k • written 20.2 years ago by
Srikanth
▴ 40
0
votes
0
replies
776
views
missing MAP locations for hgu133plus2 annotation
Genetics
Annotation
hgu133plus2
Genetics
Annotation
hgu133plus2
20.2 years ago
Srikanth
▴ 40
0
votes
0
replies
694
views
Questions related to processing large dataset in batches
Microarray
Normalization
Cancer
hgu133plus2
probe
affy
gcrma
PROcess
Microarray
Cancer
19.8 years ago
James W. MacDonald
65k
0
votes
5
replies
1.3k
views
Annotation of Affymetrix hgu133plus2 chip
Annotation
hgu133plus2
probe
Annotation
hgu133plus2
probe
updated 19.7 years ago by
rgentleman
★ 5.5k • written 19.7 years ago by
Dipl.-Ing. Johannes Rainer
▴ 430
0
votes
3
replies
1.1k
views
equivalent probes between microarray platforms
hgu133plus2
hu6800
hgu133plus2
hu6800
updated 19.5 years ago by
Sean Davis
▴ 10 • written 19.5 years ago by
Benjamin Haibe-Kains
▴ 140
0
votes
1
reply
14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2
pathview
hgu133plus2
pathview
updated 10.4 years ago by
Luo Weijun
★ 1.6k • written 10.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.0k
views
PGSEA and smcPlot
GO
hgu133plus2
PGSEA
GO
hgu133plus2
PGSEA
12.8 years ago
Iain Gallagher
▴ 930
0
votes
0
replies
836
views
Follow-up to: [R] Annotation metadata "kills" help.search
Annotation
GO
hgu133plus2
reposTools
Annotation
GO
hgu133plus2
reposTools
19.1 years ago
Gerard Tromp
▴ 10
0
votes
4
replies
1.3k
views
Problems with hgu133plus2
Annotation
hgu133plus2
Annotation
hgu133plus2
19.2 years ago
Vitalina Komashko
▴ 30
0
votes
7
replies
1.7k
views
annaffy annotation problem (hgu133plus2)
Annotation
hgu133plus2
probe
annotate
AnnBuilder
Annotation
hgu133plus2
probe
annotate
updated 19.1 years ago by
Glynn, Earl
▴ 170 • written 19.1 years ago by
Dipl.-Ing. Johannes Rainer
▴ 430
0
votes
1
reply
1.1k
views
error with plot in simpleaffy
hgu133plus2
probe
simpleaffy
hgu133plus2
probe
simpleaffy
19.0 years ago
Larry La Pointe
▴ 60
0
votes
4
replies
908
views
Annotation packages: Which Unigene Release?
hgu133plus2
hgu133plus2
updated 18.9 years ago by
John Zhang
★ 2.9k • written 18.9 years ago by
Aedin Culhane
▴ 310
0
votes
1
reply
990
views
annotation problem with hgu133plus2
Annotation
GO
hgu133plus2
cdf
annotate
affy
siggenes
annaffy
Annotation
GO
hgu133plus2
18.9 years ago
Yanqin Yang
▴ 250
0
votes
5
replies
1.0k
views
Problems with homology packages
hgu133plus2
hgu133plus2
18.8 years ago
Bosotti, Roberta [Nervianoms]
▴ 120
0
votes
2
replies
711
views
adding annotation to exprSet
Annotation
hgu133plus2
annotate
affy
limma
Annotation
hgu133plus2
annotate
affy
limma
18.7 years ago
Andreas Zankl
▴ 80
0
votes
0
replies
746
views
want to compare hgu133a and hgu133plus2
hgu133a
hgu133plus2
affy
Resourcerer
hgu133a
hgu133plus2
affy
Resourcerer
18.6 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
761
views
hgu133plus2cdf
hgu133plus2
cdf
hgu133plus2
cdf
18.2 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
764
views
annotation hgu133plus2 problem,
hgu133plus2
hgu133plus2
updated 18.2 years ago by
James W. MacDonald
65k • written 18.2 years ago by
Saurin D. Jani
▴ 360
0
votes
2
replies
1.5k
views
Package installation problem...
hgu133plus2
cdf
hgu133plus2
cdf
updated 18.1 years ago by
James W. MacDonald
65k • written 18.1 years ago by
kannaiah@bsd.uchicago.edu
▴ 10
0
votes
2
replies
953
views
annotation
hgu133plus2
mgu74av2
annotate
hgu133plus2
mgu74av2
annotate
updated 18.1 years ago by
Morten
▴ 300 • written 18.1 years ago by
marco fabbri
▴ 320
0
votes
3
replies
2.5k
views
AFFX-BioB-3_at annotation
hgu133plus2
mouse4302
hgu133plus2
mouse4302
18.1 years ago
Wu, Xiwei
▴ 350
0
votes
0
replies
1.2k
views
topGO expected value column showing NA
GO
hgu133plus2
topGO
GO
hgu133plus2
topGO
11.1 years ago
Kishor Tappita
▴ 340
0
votes
2
replies
989
views
vector allocation error
hgu133plus2
gcrma
hgu133plus2
gcrma
updated 17.8 years ago by
Francois Pepin
▴ 60 • written 17.8 years ago by
Ulrich Pfeffer
▴ 50
0
votes
0
replies
606
views
alternative CDF
hgu133a
hgu133plus2
cdf
hgu133a
hgu133plus2
cdf
18.0 years ago
Tarca, Adi
▴ 570
0
votes
1
reply
535
views
memory problem
hgu133plus2
PROcess
hgu133plus2
PROcess
updated 19.2 years ago by
Wolfgang Huber
★ 13k • written 19.2 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
2
replies
1.0k
views
Question on AffyBatch
hgu133plus2
probe
hgu133plus2
probe
updated 17.6 years ago by
Wolfgang Huber
★ 13k • written 17.6 years ago by
Gunther Höning
▴ 100
0
votes
1
reply
631
views
Question on read.probematix
hgu133plus2
hgu133plus2
updated 17.6 years ago by
James W. MacDonald
65k • written 17.6 years ago by
Gunther Höning
▴ 100
0
votes
0
replies
672
views
Does anyone have a recent annotation for hgu133plus2 ??
Annotation
hgu133plus2
AnnBuilder
Annotation
hgu133plus2
AnnBuilder
17.3 years ago
Marco Zucchelli
▴ 10
0
votes
0
replies
724
views
hgu133plus2 normalization
Microarray
hgu133plus2
PROcess
Microarray
hgu133plus2
PROcess
17.1 years ago
Bin Zheng
▴ 10
0
votes
2
replies
1.1k
views
Questions about gene identifiers and probesets regulation
Microarray
hgu133plus2
limma
Microarray
hgu133plus2
limma
updated 16.7 years ago by
James W. MacDonald
65k • written 16.7 years ago by
Chunyan Liu
▴ 40
0
votes
1
reply
1.1k
views
Question about inconsistent gene expression
Microarray
Cancer
hgu133plus2
probe
affy
limma
gcrma
Microarray
Cancer
hgu133plus2
probe
updated 16.7 years ago by
Michal Okoniewski
▴ 120 • written 16.7 years ago by
Chunyan Liu
▴ 40
0
votes
2
replies
1.1k
views
RMA of CEL files from different chip types
hgu133a
hgu133plus2
hgu133a
hgu133plus2
updated 16.6 years ago by
David Ruau
▴ 190 • written 16.6 years ago by
Abhishek Tripathi
▴ 10
0
votes
0
replies
812
views
problem running dev version of GCRMA
hgu133plus2
cdf
Biobase
affy
affyio
hgu133plus2
cdf
Biobase
affy
affyio
16.6 years ago
Martin Morgan
25k
0
votes
0
replies
725
views
Affymetrix quality control metrics with simpleaffy
GO
hgu133plus2
affy
GO
hgu133plus2
affy
16.5 years ago
Richard Friedman
★ 2.0k
0
votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI
hgu133plus2
affy
limma
affylmGUI
GUI
hgu133plus2
affy
limma
affylmGUI
updated 16.5 years ago by
Martin Morgan
25k • written 16.5 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
794
views
Mapping Affy probes to OperonID or ensemblID
Cancer
hgu133plus2
Cancer
hgu133plus2
updated 16.5 years ago by
Sean Davis
21k • written 16.5 years ago by
Julian Lee
▴ 140
0
votes
3
replies
2.7k
views
How to get ENTREZID from Gene symbol in bioconductor
hgu133plus2
hgu133plus2
updated 16.1 years ago by
Marc Carlson
★ 7.2k • written 16.1 years ago by
Srinivas Iyyer
▴ 600
0
votes
3
replies
1.2k
views
Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2
affy
limma
gcrma
hgu133plus2
affy
limma
gcrma
15.8 years ago
Boel Brynedal
▴ 200
0
votes
0
replies
826
views
dev2bitmap error, 'gs' cannot be found
hgu133plus2
Category
hgu133plus2
Category
15.8 years ago
Boel Brynedal
▴ 200
0
votes
0
replies
666
views
Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2
affy
limma
gcrma
hgu133plus2
affy
limma
gcrma
15.8 years ago
Boel Brynedal
▴ 200
0
votes
0
replies
682
views
problem with moe430a version 1.12.0?
hgu133a
hgu133plus2
moe430a
moe430b
rae230b
probe
hgu133a
hgu133plus2
moe430a
moe430b
18.0 years ago
MARIA STALTERI
▴ 160
50 results • Page
1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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