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Answer: Filter Mutations?
by
Marcel Ramos
570
Hi Ryan,
We use the `RaggedExperiment` class because it allows you to do much more than what a simple `data.frame` can do.
Have a l…
Comment: rtracklayer import only subset of ranges
by
shepherl
3.2k
Looks like it might be exclusion of the start but inclusive of stop:
```
> which <- GRanges(c("chr10"), IRanges(start=180185, end=180185)…
Comment: Unable to download supplementary files from GSE146963 using GEOquery
by
shepherl
3.2k
I'm not able to reproduce this. Are you sure you have permissions on where you are downloading/writing?
```
> getGEOSuppFiles("GSE146963"…
Answer: Unable to download supplementary files from GSE146963 using GEOquery
by
James W. MacDonald
60k
The error indicates that R doesn't have permissions to remove a file from that directory, which may imply that it doesn't have permissions …
Answer: data import error
by
Basti
▴
400
You already imported `countData` with `read.csv()`, so it has no sense to make `read.csv` again on countData. Simply do `cts <- as.matrix(c…
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