Showing : hgu95av2 • reset
0
votes
5
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1.6k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 6.2 years ago by ▴ 110 • written 10.1 years ago by ▴ 760
0
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5
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2.1k
views
failing to filter ExpressionSet object using nsFilter
hgu95av2 hgu95av2
updated 7.9 years ago by 25k • written 7.9 years ago by ★ 12k
0
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0
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991
views
GEOquery/virtualArray package error
Preprocessing hgu95av2 virtualArray Preprocessing hgu95av2 virtualArray
8.1 years ago Guest User ★ 12k
0
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0
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1.1k
views
[phenoTest package]: gsea.kegg error with absVals parameter
Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest
8.2 years ago Kostas Kerkentzes ▴ 10
0
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1
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1.3k
views
Non-specific filtering of Affymetrix Microarray data
GO hgu95av2 GO hgu95av2
updated 8.3 years ago by 13k • written 8.3 years ago by ★ 12k
0
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3
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727
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Creating Annotation package for GPL10427
Annotation hgu95av2 Annotation hgu95av2
updated 8.7 years ago by 60k • written 8.7 years ago by ★ 12k
0
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2
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2.2k
views
getGmt error
GO hgu95a hgu95av2 GO hgu95a hgu95av2
updated 8.7 years ago by 25k • written 8.7 years ago by ★ 12k
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0
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1.3k
views
library(\"geneplotter\") fails on load
GO hgu95av2 geneplotter GO hgu95av2 geneplotter
9.0 years ago Guest User ★ 12k
0
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6
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915
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 9.1 years ago by ★ 8.2k • written 9.1 years ago by ▴ 430
0
votes
1
reply
1.3k
views
nsfilter error from expressionset obtained after using aroma for processing
Annotation Preprocessing hgu95av2 limma Annotation Preprocessing hgu95av2 limma
updated 9.2 years ago by 13k • written 9.2 years ago by ▴ 810
0
votes
1
reply
1.6k
views
enrichment of GO terms based on input gene list
GO hgu95av2 GO hgu95av2
updated 9.2 years ago by ▴ 570 • written 9.2 years ago by ★ 12k
0
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2
replies
1.2k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 80
0
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1
reply
3.4k
views
getAnnMap: package hgu95av2 not available
hgu95av2 hgu95av2
updated 9.3 years ago by 25k • written 9.3 years ago by ★ 12k
0
votes
1
reply
748
views
Annotation databases--unable to get annotations
Annotation GO hgu95av2 probe limma Annotation GO hgu95av2 probe limma
updated 9.6 years ago by 60k • written 9.6 years ago by ★ 12k
0
votes
0
replies
628
views
gene2pathway retrain() error: species \'hsa\' unknown
Organism hgu95av2 gene2pathway Organism hgu95av2 gene2pathway
9.9 years ago Guest User ★ 12k
0
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0
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898
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
10.0 years ago Yoo, Seungyeul ▴ 110
0
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1
reply
2.6k
views
problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 10.2 years ago by ▴ 400 • written 10.2 years ago by ▴ 480
0
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1
reply
819
views
creating a UniprotIdentifier within GSEABase
Annotation Cancer hgu95av2 convert GSEABase Annotation Cancer hgu95av2 convert GSEABase
updated 10.8 years ago by 25k • written 10.8 years ago by ▴ 910
0
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0
replies
635
views
Help with interpreting GEO derived data values
GO hgu95av2 GO hgu95av2
10.9 years ago Ochsner, Scott A ▴ 60
0
votes
1
reply
589
views
Use of createSimpleBimap
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
updated 11.2 years ago by ★ 4.2k • written 11.2 years ago by ★ 1.1k
0
votes
13
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1.5k
views
Hypergeometric test with Disease Ontology
GO hgu95av2 GO hgu95av2
updated 11.3 years ago by ▴ 300 • written 11.3 years ago by ▴ 60
0
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0
replies
690
views
Problem in affypdnn package
hgu95av2 affypdnn hgu95av2 affypdnn
11.9 years ago Hasan, Ahmed Ryadh - hasar001 ▴ 20
0
votes
1
reply
800
views
GSEABase and Broad Inst Sets
Annotation hgu133plus2 hgu95av2 GSEABase Annotation hgu133plus2 hgu95av2 GSEABase
updated 11.9 years ago by 25k • written 11.9 years ago by ▴ 930
0
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0
replies
710
views
SPIA package problem
Microarray GO Cancer Organism hgu95av2 mgug4122a SPIA Microarray GO Cancer Organism
12.0 years ago January Weiner ▴ 370
0
votes
1
reply
788
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 12.2 years ago by ▴ 610 • written 12.2 years ago by ▴ 190
0
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1
reply
1.1k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 50
0
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1
reply
1.1k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 12.3 years ago by ★ 2.9k • written 12.3 years ago by ★ 1.1k
0
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1
reply
751
views
extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 12.4 years ago by ▴ 610 • written 12.4 years ago by ★ 2.0k
0
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0
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1.0k
views
mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
13.1 years ago James W. MacDonald 60k
0
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0
replies
623
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
13.1 years ago Hervé Pagès 15k
0
votes
2
replies
3.7k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 13.1 years ago by 13k • written 13.1 years ago by ▴ 300
0
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0
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649
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
13.3 years ago Michael Lawrence ▴ 620
0
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1
reply
850
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ▴ 180
0
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0
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839
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
13.4 years ago Paul Evans ▴ 180
0
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0
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806
views
sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
13.5 years ago Dick Beyer ★ 1.4k
0
votes
7
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806
views
Rkeys function from AnnotationDbi returns all Rkeys for a subset
hgu95av2 hgu95av2
updated 13.5 years ago by 60k • written 13.5 years ago by ▴ 110
0
votes
0
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595
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hyperGTest on KEGG and PFAM with org.XX.eg annotations
Microarray Annotation Escherichia coli hgu95av2 Category Microarray Annotation hgu95av2
13.5 years ago Marc Carlson ★ 7.2k
0
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0
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709
views
hyperGTest on KEGG and PFAM with org.XX.eg annotations
Microarray Annotation Escherichia coli hgu95av2 Microarray Annotation Escherichia coli
13.5 years ago James F. Reid ▴ 610
0
votes
0
replies
642
views
Trouble Loading Rgraphviz in BioC 2.2 and 2.3
hgu95av2 Rgraphviz hgu95av2 Rgraphviz
13.5 years ago McGee, Monnie ▴ 300
0
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0
replies
673
views
Mean Plots and Heat Maps for Chromosome Bands
Pathways hgu95av2 Pathways hgu95av2
13.5 years ago McGee, Monnie ▴ 300
0
votes
1
reply
604
views
browseGenome width question (rtracklayer)
GO hgu95av2 GO hgu95av2
updated 13.6 years ago by ▴ 620 • written 13.6 years ago by ★ 1.1k
0
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8
replies
1.1k
views
Annotation packages
Annotation GO hgu95av2 affy limma Annotation GO hgu95av2 affy limma
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 350
0
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2
replies
642
views
hyperGTest
GO hgu133a hgu133plus2 hgu95av2 GO hgu133a hgu133plus2 hgu95av2
updated 13.6 years ago by ★ 5.5k • written 13.6 years ago by ★ 1.2k
0
votes
3
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676
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 300
0
votes
1
reply
623
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 300
0
votes
2
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816
views
GeneR fail to compile
hgu95av2 GeneR hgu95av2 GeneR
updated 13.7 years ago by ★ 5.5k • written 13.7 years ago by ▴ 120
0
votes
1
reply
524
views
How to load annotations for pkgENTREZID, pkgGENENAME dynamically?
Cancer hgu95av2 affy Cancer hgu95av2 affy
updated 13.7 years ago by ▴ 360 • written 13.7 years ago by 25k
0
votes
3
replies
1.8k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
13.8 years ago anna freni sterrantino ▴ 120
0
votes
0
replies
722
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
13.9 years ago Chanchal Kumar ▴ 130
0
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1
reply
1.0k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 130
50 results • Page 1 of 1
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Comment: Italicise by Pau • 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
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Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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