Showing : hgu95av2 • reset
2
votes
3
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1.1k
views
Creating Annotation package for GPL10427
Annotation hgu95av2 Annotation hgu95av2
updated 10.5 years ago by 65k • written 10.6 years ago by ★ 13k
0
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0
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1.1k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
18.5 years ago Shi, Tao ▴ 720
0
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2
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1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
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1
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1.2k
views
hyperGTest Error in sqliteExecStatement...
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ▴ 10
0
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0
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945
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Mean Plots and Heat Maps for Chromosome Bands
Pathways hgu95av2 Pathways hgu95av2
15.4 years ago McGee, Monnie ▴ 300
0
votes
0
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1.1k
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.2 years ago Michael Lawrence ▴ 620
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0
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views
mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
15.0 years ago James W. MacDonald 65k
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5
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2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.0 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
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0
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646
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vignette feedback - HowTo: Automated Querying of PubMed Data
hgu95a hgu95av2 hgu95a hgu95av2
21.0 years ago Lynn Young ▴ 30
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votes
0
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728
views
vignette feedback - HowTo: Automated Querying of PubMed Data
Cancer hgu95a hgu95av2 Cancer hgu95a hgu95av2
21.0 years ago John Zhang ★ 2.9k
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votes
4
replies
1.1k
views
Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
21.0 years ago • updated 20.9 years ago madman@jimmy.harvard.edu ▴ 850
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0
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example of working from a database dump
hgu95av2 Biobase affy limma hgu95av2 Biobase affy limma
20.6 years ago Vincent J. Carey, Jr. 6.7k
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1
reply
1.0k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 60
0
votes
1
reply
696
views
ReadAffy problem sampleNames + hgu95av2
hgu95av2 Biobase affy hgu95av2 Biobase affy
19.9 years ago Adaikalavan Ramasamy ★ 1.8k
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Re: MetaData 1.6.0
Annotation GO Organism hgu95av2 mguatlas5k mgug4121a rgug4130a probe Category Annotation
19.9 years ago John Zhang ★ 2.9k
0
votes
3
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852
views
Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 550
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0
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917
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HGU95A and HGU95ACDF
Annotation Cancer hgu95a hgu95av2 cdf Annotation Cancer hgu95a hgu95av2 cdf
19.6 years ago John Zhang ★ 2.9k
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votes
4
replies
2.3k
views
HGU95a and HGU95av2 with gcrma
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
updated 19.4 years ago by ★ 13k • written 19.4 years ago by ▴ 80
0
votes
0
replies
762
views
Problem with aafSymbol
hgu95av2 moe430a annaffy hgu95av2 moe430a annaffy
19.3 years ago Jeff Lande ▴ 110
0
votes
0
replies
913
views
Re: HGU95a and HGU95av2 with gcrma and combineAffybatch
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
19.3 years ago Vincent Detours ▴ 80
0
votes
1
reply
618
views
hgu95av2
hgu95av2 hgu95av2
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ★ 1.3k
0
votes
1
reply
1.0k
views
Error with library hgu95av2
hgu95av2 hgu95av2
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 40
0
votes
3
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820
views
GO with mu11ksuba(b)
GO hgu95av2 mu11ksuba cdf GO hgu95av2 mu11ksuba cdf
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 300
0
votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 100
0
votes
1
reply
648
views
Category package problems with Vignette documentation
Microarray hgu95av2 Category Microarray hgu95av2 Category
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 20
0
votes
6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
votes
2
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1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
votes
1
reply
883
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
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2
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1.6k
views
GEOquery and GEO issues
hgu95a hgu95av2 GEOquery hgu95a hgu95av2 GEOquery
18.2 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
0
replies
568
views
problems with GO package data
GO Cancer hgu95av2 probe Biobase annotate genefilter multtest graph GOstats GO Cancer
18.2 years ago Yu-An Dong ▴ 40
0
votes
0
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533
views
Where does BioC metadata come from?
Annotation hgu95av2 affy Annotation hgu95av2 affy
17.9 years ago Suraj Menon ▴ 50
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0
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1.1k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
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2
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1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
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2
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984
views
GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 17.6 years ago by ★ 7.4k • written 17.6 years ago by ▴ 70
0
votes
3
replies
1.2k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 17.0 years ago by ▴ 870 • written 17.0 years ago by 65k
0
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0
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648
views
(no subject)
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
16.9 years ago David Ruau ▴ 190
0
votes
6
replies
1.4k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 190
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 2.2k
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.5 years ago Hervé Pagès 16k
0
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0
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471
views
error in qc AffyQCReport package
hgu95av2 hgu95av2
16.5 years ago Mayte Suarez-Farinas ▴ 510
0
votes
1
reply
944
views
ExpressionSet class and problems with phenotype and metadata matrices
Annotation Clustering hgu95av2 Annotation Clustering hgu95av2
updated 16.2 years ago by 65k • written 16.2 years ago by ▴ 60
0
votes
0
replies
753
views
ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
16.2 years ago Martin Morgan 25k
0
votes
0
replies
616
views
AnnonationDbi inteface with RApache
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
15.9 years ago Francesco Favero ▴ 30
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 130
0
votes
0
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1.2k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
15.7 years ago Chanchal Kumar ▴ 130
0
votes
3
replies
2.4k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
15.7 years ago anna freni sterrantino ▴ 120
0
votes
1
reply
853
views
How to load annotations for pkgENTREZID, pkgGENENAME dynamically?
Cancer hgu95av2 affy Cancer hgu95av2 affy
updated 15.6 years ago by ▴ 360 • written 15.6 years ago by 25k
0
votes
2
replies
1.2k
views
GeneR fail to compile
hgu95av2 GeneR hgu95av2 GeneR
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 120
0
votes
1
reply
824
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
0
votes
3
replies
1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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