Biostar

No posts found.

0 results • Page 1 of 1

Recent ...

Replies

Comment: KEGG enrichment in R and gene IDs by Guido Hooiveld ★ 3.6k

Yep, that is the reason! This is working (note that in the code below no significance cutoff is applied): > library(clusterProfiler) …

Answer: Error in h5checktype(). H5Identifier not valid. by Cynthia • 0

Hi Nargil, hopefully this can answer your question. The h5ad files are composed of a cell by feature, such as genes expression and peak…

Comment: KEGG enrichment in R and gene IDs by Laia ▴ 10

symbol_genes[1:10] "TREML3P" "IL13RA2" "MMP10" "LOC124907722" "AKR1C7P" "LOC124903970" "IL11" …

Answer: KEGG enrichment in R and gene IDs by James W. MacDonald 62k

ncbi-geneID and ENTREZID are the same thing.

Comment: KEGG enrichment in R and gene IDs by Guido Hooiveld ★ 3.6k

Please show the output from `symbol_genes[1:10]` and `entrez_genes[1:10]`; thus (for example) the first 10 symbols resp. entrezids.

Votes

Confused about design for RNA seq experiment

Awards • All

Popular Question to Michael Love 39k

Popular Question to Assa Yeroslaviz ★ 1.5k

Popular Question to Guido Hooiveld ★ 3.6k

Scholar to Gordon Smyth 47k

Locations • All

Netherlands, just now

United States, 1 minute ago

Germany, 1 minute ago

Wageningen University, Wageningen, the Netherlands, 3 minutes ago

United States, 4 minutes ago

Traffic: 776 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the

version 2.3.6