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Showing :
hgug4112a
•
reset
3
votes
9
replies
2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma
annotation
agilent
hgug4112a
microarray
8.2 years ago
Konstantinos Yeles
▴ 80
0
votes
0
replies
1.1k
views
virtualArray package
Annotation
Preprocessing
hgu133plus2
hgug4112a
9.6 years ago
Guest User
★ 13k
0
votes
0
replies
8.8k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray
Annotation
Preprocessing
hgu133plus2
hgug4112a
virtualArray
Microarray
hgug4112a
9.8 years ago
Guest User
★ 13k
0
votes
1
reply
907
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation
hgug4112a
Annotation
hgug4112a
updated 10.5 years ago by
James W. MacDonald
65k • written 10.5 years ago by
Pitea Adriana
▴ 10
0
votes
0
replies
1.2k
views
Quantiles from virtualArray example without batcheffect removal are all the same
Microarray
BatchEffect
hgu133plus2
hgug4112a
virtualArray
Microarray
BatchEffect
hgug4112a
11.0 years ago
Daniel Emden
▴ 10
0
votes
0
replies
1.1k
views
Mapping genes to their gene sets for GSEA
Microarray
Genetics
GO
hgu95av2
hgug4112a
Microarray
Genetics
GO
hgu95av2
hgug4112a
11.8 years ago
Yoo, Seungyeul
▴ 110
0
votes
1
reply
795
views
How to create annotation package for not a supported organism
Annotation
GO
Organism
hgug4112a
Annotation
GO
Organism
hgug4112a
updated 12.5 years ago by
Valerie Obenchain
★ 6.8k • written 12.6 years ago by
Alogmail2@aol.com
▴ 90
0
votes
0
replies
970
views
FW: normalization one color microarrays
Normalization
hgug4112a
PROcess
Agi4x44PreProcess
Normalization
hgug4112a
PROcess
12.6 years ago
Paz Tapia Ramirez
▴ 150
0
votes
1
reply
1.1k
views
Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a
Agi4x44PreProcess
hgug4112a
Agi4x44PreProcess
updated 13.7 years ago by
Neel Aluru
▴ 460 • written 13.7 years ago by
Turner, Julia
▴ 20
0
votes
1
reply
863
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a
RmiR
hgug4112a
RmiR
updated 13.9 years ago by
Martin Morgan
25k • written 13.8 years ago by
Wendelin Waunzel
▴ 10
0
votes
2
replies
933
views
Agilent annotation source
Annotation
hgug4112a
oligo
Annotation
hgug4112a
oligo
updated 14.2 years ago by
James W. MacDonald
65k • written 14.2 years ago by
Axel Klenk
▴ 990
0
votes
0
replies
863
views
Questions on the package "RmiR"
miRNA
hgug4112a
RmiR
miRNA
hgug4112a
RmiR
14.2 years ago
jason0701
▴ 190
0
votes
0
replies
833
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a
probe
limma
Agi4x44PreProcess
hgug4112a
probe
limma
Agi4x44PreProcess
14.3 years ago
Pedro Lopez-Romero
▴ 120
0
votes
0
replies
1.3k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO
hgug4112a
probe
GO
hgug4112a
probe
14.3 years ago
Massimo Pinto
▴ 390
0
votes
0
replies
811
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation
hgug4112a
Annotation
hgug4112a
14.4 years ago
Massimo Pinto
▴ 390
0
votes
3
replies
1.8k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a
hgug4112a
updated 14.4 years ago by
rgentleman
★ 5.5k • written 14.4 years ago by
Massimo Pinto
▴ 390
0
votes
11
replies
1.8k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a
hgug4112a
updated 14.4 years ago by
Francois Pepin
★ 1.3k • written 14.4 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
9.1k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO
hgug4112a
GO
hgug4112a
updated 14.4 years ago by
James W. MacDonald
65k • written 14.4 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
818
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO
GUI
hgug4112a
limma
PROcess
Agi4x44PreProcess
GO
GUI
hgug4112a
limma
PROcess
14.7 years ago
Massimo Pinto
▴ 390
0
votes
1
reply
1.1k
views
GOstats: HyperGTest for KEGG
Annotation
GO
Yeast
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hgug4110b
hgug4112a
GO
updated 15.2 years ago by
Marc Carlson
★ 7.2k • written 15.2 years ago by
Paul Evans
▴ 180
0
votes
0
replies
1.1k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation
GO
Yeast
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hgug4110b
hgug4112a
GO
15.2 years ago
Paul Evans
▴ 180
0
votes
2
replies
1.7k
views
Agilent G4112F with hgug4112a.db?
GO
hgug4112a
GO
hgug4112a
updated 15.4 years ago by
Francois Pepin
★ 1.3k • written 15.4 years ago by
Philipp Pagel
▴ 190
0
votes
1
reply
917
views
Agilent spike-in probes
Annotation
Normalization
GO
hgug4112a
limma
Annotation
Normalization
GO
hgug4112a
limma
updated 16.0 years ago by
Sean Davis
21k • written 16.0 years ago by
Srinivas Iyyer
▴ 600
0
votes
1
reply
882
views
Agilent spike-in probes
Annotation
Normalization
GO
hgug4112a
limma
Annotation
Normalization
GO
hgug4112a
limma
updated 16.0 years ago by
Naomi Altman
★ 6.0k • written 16.0 years ago by
Sean Davis
21k
24 results • Page
1 of 1
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Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
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by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
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Circumvent creating .ff files in the working directory when using genotype.Illumina() function
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