Showing : hgug4112a • reset
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an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 14.5 years ago by 65k • written 14.5 years ago by ▴ 390
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virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
9.9 years ago Guest User ★ 13k
3
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9
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2.4k
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Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.2 years ago Konstantinos Yeles ▴ 80
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11
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1.8k
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 14.5 years ago by ★ 1.3k • written 14.5 years ago by ▴ 390
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3
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1.8k
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 14.5 years ago by ★ 5.5k • written 14.5 years ago by ▴ 390
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2
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Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 15.5 years ago by ★ 1.3k • written 15.5 years ago by ▴ 190
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on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
14.4 years ago Massimo Pinto ▴ 390
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.0 years ago Daniel Emden ▴ 10
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1
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1.2k
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GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 180
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GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
15.3 years ago Paul Evans ▴ 180
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Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 13.7 years ago by ▴ 460 • written 13.7 years ago by ▴ 20
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virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
9.6 years ago Guest User ★ 13k
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0
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1.1k
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
11.9 years ago Yoo, Seungyeul ▴ 110
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0
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986
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FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
12.7 years ago Paz Tapia Ramirez ▴ 150
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2
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951
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 14.2 years ago by 65k • written 14.2 years ago by ★ 1.0k
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1
reply
926
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Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 600
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1
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916
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hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 10.5 years ago by 65k • written 10.5 years ago by ▴ 10
0
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1
reply
893
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by ★ 6.0k • written 16.1 years ago by 21k
0
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1
reply
873
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 10
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0
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872
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Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
14.2 years ago jason0701 ▴ 190
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0
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841
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
14.3 years ago Pedro Lopez-Romero ▴ 120
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825
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build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
14.8 years ago Massimo Pinto ▴ 390
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0
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822
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
14.5 years ago Massimo Pinto ▴ 390
0
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1
reply
810
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ▴ 90
24 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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