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hi-c
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10
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FourC object from scratch
hi-c
HiTC
fourcseq
8.5 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
1
vote
5
replies
1.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.8 years ago
ta_awwad
▴ 10
2
votes
4
replies
1.7k
views
diffHic-package_PreparePairs-function-error:"missing chromosomes in cut site list"
diffHic
PreparePairs
Hi-c
cutGenome
8.9 years ago • updated 8.8 years ago
rulicosentino
• 0
1
vote
4
replies
1.8k
views
Is there a way to align Hi-C half heatmaps to Gviz track?
Gviz
Hi-C
Heatmap
updated 8.0 years ago by
Nicolas Servant
▴ 260 • written 8.0 years ago by
Merienne Nicolas
▴ 120
3
votes
2
replies
2.3k
views
Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
6.8 years ago
e.jacobson
▴ 10
0
votes
2
replies
886
views
diffHic ICE normalization PCA with NAs
diffHic
normalization
pca
NAs
HI-C
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
inzirio
▴ 10
6 results • Page
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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