Biostar Hic

Showing : hic • reset

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1.5k

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HiTC gothic diffhic HiC

6.8 years ago Bogdan ▴ 640

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1.2k

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GOTHiC hic

6.8 years ago Nathan Sheffield ▴ 10

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859

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diffhic hicpro hic

4.9 years ago sergio.espeso-gil • 0

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858

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hic

updated 3.4 years ago by bioparticles.melly • 0 • written 3.5 years ago by m.t.lorenc • 0

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804

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diffhic hic

updated 4.7 years ago by Aaron Lun ★ 27k • written 4.7 years ago by hwick1 ▴ 20

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653

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diffHic GenomicInteractions edgeR HiC cooler

updated 22 months ago by Aaron Lun ★ 27k • written 22 months ago by Marco Blanchette ▴ 30

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642

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diffhic gothic hicup hic-c hic

updated 3.5 years ago by Aaron Lun ★ 27k • written 3.5 years ago by mictadlo • 0

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606

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diffhic hic interactionset contactmatrix inflate

updated 4.7 years ago by Aaron Lun ★ 27k • written 4.7 years ago by hwick1 ▴ 20

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539

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hic diffhic chromatin bedpe

updated 3.8 years ago by Aaron Lun ★ 27k • written 3.8 years ago by gryderart • 0

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423

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hic diffhic gothic hicup hic-c

3.6 years ago • updated 3.5 years ago mictadlo • 0

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384

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 7 weeks ago by merve.sahn • 0 • written 19 months ago by mtS • 0

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279

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diffHic HiC InteractionSet

updated 2.2 years ago by Aaron Lun ★ 27k • written 2.2 years ago by girardot • 0

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236

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HiCompare HiC cool

updated 2.7 years ago by Kevin Blighe 3.5k • written 2.7 years ago by c.chakraborty • 0

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174

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HiC hicrep HiCcompare

20 months ago changxu.fan ▴ 10

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145

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HOMER HiCUP BAM HiC

7 months ago Ankit ▴ 10

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HiC Epigenetics HiCHIP ChIPSeq

10 days ago • updated 9 days ago xubeisi • 0

16 results • Page 1 of 1

Recent ...

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Comment: Finding differentially expressed genes in a prospective cohort study by YC • 0

Thank you for your explanation and clarification. So, if I understand right, the purpose of building linear models in LIMMA is to find diff…

Comment: I got error message about DESeqDataSetFromMatrix by Md. Faridul • 0

I run the library(DESeq2) then got error message. I am new in r. How to solve this error. Error: package or namespace load failed for ‘DES…

Comment: I got error message about DESeqDataSetFromMatrix by Md. Faridul • 0

Yes , I did.

Answer: I got error message about DESeqDataSetFromMatrix by swbarnes2 ★ 1.1k

Did you do `library(DESeq2)` first? That's the error you get when the software has no idea what function you are referring to, beca…

Comment: miRNA differential expression analysis - treat as transcript level? by Michael Love 37k

This is very low and I think you can just use regular count-based methods safely. If you look at the ~3 features above 1 those are probably…

Votes

C: Converting numeric variables to factors in DESeq metadata

Comment: miRNA differential expression analysis - treat as transcript level?

At least one covariate is confounded with batch! Please remove confounded covariates and rerun ComBat

Comment: RSEM - tximport; where is effective_length information used? Implications for sc

Awards • All

Teacher to Michael Love 37k