Bioconductor Hic

Showing : hic • reset

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2.4k

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HiTC gothic diffhic HiC

8.6 years ago Bogdan ▴ 670

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1.6k

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GOTHiC hic

8.6 years ago Nathan Sheffield ▴ 10

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1.6k

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by Marco Blanchette ▴ 30

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1.6k

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diffhic hic

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.5k

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hic

updated 5.3 years ago by bioparticles.melly • 0 • written 5.3 years ago by m.t.lorenc • 0

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1.5k

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diffhic gothic hicup hic-c hic

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mictadlo ▴ 10

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1.4k

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diffhic hicpro hic

6.7 years ago sergio.espeso-gil • 0

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1.3k

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hic diffhic chromatin bedpe

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by gryderart • 0

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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896

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hic diffhic gothic hicup hic-c

5.4 years ago mictadlo ▴ 10

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851

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HiCompare HiC cool

updated 4.6 years ago by Kevin Blighe ★ 3.9k • written 4.6 years ago by c.chakraborty • 0

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827

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 23 months ago by merve.sahn • 0 • written 3.5 years ago by mtS • 0

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822

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

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801

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HOMER HiCUP BAM HiC

2.4 years ago Ankit ▴ 20

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783

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HiC Epigenetics HiCHIP ChIPSeq

22 months ago xubeisi • 0

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544

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HiC hicrep HiCcompare

3.5 years ago changxu.fan ▴ 20

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282

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JuicerTools HiC HiCDCPlus Java Juicer

written 4 months ago by IsMM • 0

17 results • Page 1 of 1

Recent ...

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0