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Showing :
hic
•
reset
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago • updated 8.5 years ago
Bogdan
▴ 670
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC
hic
8.5 years ago
Nathan Sheffield
▴ 10
1
vote
7
replies
1.5k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
Marco Blanchette
▴ 30
0
votes
8
replies
1.5k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
hwick1
▴ 20
0
votes
3
replies
1.5k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.2 years ago by
bioparticles.melly
• 0 • written 5.2 years ago by
m.t.lorenc
• 0
0
votes
9
replies
1.4k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
mictadlo
▴ 10
2
votes
2
replies
1.4k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
6.7 years ago
sergio.espeso-gil
• 0
1
vote
1
reply
1.3k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
gryderart
• 0
2
votes
1
reply
1.2k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
hwick1
▴ 20
0
votes
1
reply
877
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.3 years ago
mictadlo
▴ 10
0
votes
1
reply
819
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.5 years ago by
Kevin Blighe
★ 3.9k • written 4.5 years ago by
c.chakraborty
• 0
0
votes
3
replies
812
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 23 months ago by
merve.sahn
• 0 • written 3.4 years ago by
mtS
• 0
0
votes
1
reply
796
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
girardot
• 0
0
votes
0
replies
768
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.4 years ago
Ankit
▴ 20
0
votes
0
replies
758
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
21 months ago
xubeisi
• 0
0
votes
0
replies
522
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.4 years ago
changxu.fan
▴ 20
0
votes
2
replies
243
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 3 months ago by
IsMM
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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