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hic
•
reset
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago • updated 8.5 years ago
Bogdan
▴ 670
2
votes
1
reply
1.2k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
hwick1
▴ 20
2
votes
2
replies
1.4k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
6.7 years ago
sergio.espeso-gil
• 0
1
vote
1
reply
1.3k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
gryderart
• 0
1
vote
7
replies
1.5k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
817
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.5 years ago by
Kevin Blighe
★ 3.9k • written 4.5 years ago by
c.chakraborty
• 0
0
votes
1
reply
793
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
girardot
• 0
0
votes
0
replies
522
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.4 years ago
changxu.fan
▴ 20
0
votes
3
replies
812
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 23 months ago by
merve.sahn
• 0 • written 3.4 years ago by
mtS
• 0
0
votes
0
replies
767
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.3 years ago
Ankit
▴ 20
0
votes
0
replies
757
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
21 months ago
xubeisi
• 0
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC
hic
8.5 years ago
Nathan Sheffield
▴ 10
0
votes
2
replies
242
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 3 months ago by
IsMM
• 0
0
votes
8
replies
1.5k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
hwick1
▴ 20
0
votes
1
reply
877
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.3 years ago
mictadlo
▴ 10
0
votes
9
replies
1.4k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
mictadlo
▴ 10
0
votes
3
replies
1.5k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.2 years ago by
bioparticles.melly
• 0 • written 5.2 years ago by
m.t.lorenc
• 0
17 results • Page
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by
Michael Love
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Yes that is correct
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
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