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hicdcplus
•
reset
3
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7
replies
2.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.1 years ago by
koushik
• 0 • written 3.4 years ago by
Tay
▴ 10
0
votes
2
replies
280
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 4 months ago by
IsMM
• 0
0
votes
3
replies
827
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 23 months ago by
merve.sahn
• 0 • written 3.5 years ago by
mtS
• 0
0
votes
1
reply
777
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 10 months ago by
merve.sahn
• 0 • written 16 months ago by
Yue
• 0
0
votes
1
reply
448
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 16 months ago by
Yue
• 0
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 13 months ago by
Michelle
• 0 • written 2.4 years ago by
franceschini.gianmarco
• 0
0
votes
1
reply
384
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 13 months ago by
mlin18
• 0
0
votes
1
reply
625
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 23 months ago by
merve.sahn
• 0 • written 2.7 years ago by
Hannah
• 0
0
votes
2
replies
651
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 20 months ago by
scott
• 0 • written 2.1 years ago by
1037144675
• 0
0
votes
1
reply
438
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 11 months ago by
ehamrud
• 0
0
votes
0
replies
115
views
HiCDCPlus differential interaction error
HiCDCPlus
11 weeks ago
Irene
• 0
0
votes
1
reply
743
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 23 months ago by
merve.sahn
• 0 • written 2.3 years ago by
ta_awwad
▴ 10
12 results • Page
1 of 1
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
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