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hicdcplus
•
reset
0
votes
0
replies
115
views
HiCDCPlus differential interaction error
HiCDCPlus
11 weeks ago
Irene
• 0
0
votes
2
replies
282
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 4 months ago by
IsMM
• 0
0
votes
1
reply
440
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 11 months ago by
ehamrud
• 0
0
votes
1
reply
389
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 13 months ago by
mlin18
• 0
0
votes
1
reply
780
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 10 months ago by
merve.sahn
• 0 • written 16 months ago by
Yue
• 0
0
votes
1
reply
449
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
2
replies
653
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 20 months ago by
scott
• 0 • written 2.1 years ago by
1037144675
• 0
0
votes
1
reply
743
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 24 months ago by
merve.sahn
• 0 • written 2.3 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 13 months ago by
Michelle
• 0 • written 2.4 years ago by
franceschini.gianmarco
• 0
0
votes
1
reply
625
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 24 months ago by
merve.sahn
• 0 • written 2.7 years ago by
Hannah
• 0
3
votes
7
replies
2.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.1 years ago by
koushik
• 0 • written 3.4 years ago by
Tay
▴ 10
0
votes
3
replies
828
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 24 months ago by
merve.sahn
• 0 • written 3.5 years ago by
mtS
• 0
12 results • Page
1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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