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Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

More failures encountered k_skip = tximeta(coldata = data.frame(files = m, names = names(m)), type = 'oarfish',…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Thanks Annaleigh! I'll make sure to also reply here once we've worked out Oarfish to tximeta with metadata, or any other analysis pipeline …

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Trying to do differential gene expression(for other reasons) and also DTU in the same bucket. I will try the skipMeta=TRUE and update with…

Answer: XCMS Data Processing by James W. MacDonald 67k

There are three different ways to troubleshoot. You can run under the debugger, or wait until the error occurs and then do `traceback()` to…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

That's true. We haven't yet developed the Oarfish to tximeta pipeline yet. Can you say what functionality you need? Do you want to do test…

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Answer: Limma Interaction Effect with Covariates

A: Processing agilent data by limma

A: Linear regression in DESeq2

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