updated 3.0 years ago by
James W. MacDonald
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written 3.0 years ago by
v.yuvanesh
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Answer: regression analysis for epic array methylation data using limma
by
Basti
▴
280
Which package do you intend to use ? There are many tutorials in packages vignette that show you how to perform differential methylation an…
Comment: scRNASeq reference at a transcript level
by
Basti
▴
280
I believe this question is not related to any Bioconductor package, I think the only solution to this question is to search yourself in Pub…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴
10
Upgrading the package solved the issue, thanks!
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
ATpoint
★
1.2k
The error comes from the `mixsqp` package, see https://github.com/stephens999/ashr/issues/131. Upgrading the package to the most recent 0.3…
Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
by
andrebolerbarros
▴
10
Thanks for the suggestion.
I ran the following filtering criteria:
```
keep <- rowSums(counts(dds) >= 10) >= 5
dds <- dds[keep,]
```
It ga…
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