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homer
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3
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2.3k
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Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
6.8 years ago
e.jacobson
▴ 10
1
vote
3
replies
2.1k
views
Using HOMER called peaks in DiffBind
diffbind
HOMER
6.4 years ago
Hesh
▴ 10
0
votes
1
reply
1.9k
views
Homer getDiffExpression.pl issue
homer
atac-seq
updated 6.8 years ago by
Maciej Jończyk
• 0 • written 6.8 years ago by
niu.shengyong
• 0
0
votes
1
reply
1.8k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.6 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
0
votes
2
replies
1.2k
views
HOMER error: Where is the file?
HOMER
chip-seq
updated 18 months ago by
ATpoint
★ 4.0k • written 18 months ago by
兆豪
• 0
0
votes
1
reply
1.1k
views
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
HOMER
Motif Analysis
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
JMallory
• 0
0
votes
0
replies
801
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.4 years ago
Ankit
▴ 20
7 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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