Showing : hopach • reset
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Bioconductor Digest, Vol 87, Issue 10
Clustering hopach Clustering hopach
updated 13.9 years ago by ▴ 160 • written 14.0 years ago by ▴ 130
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
updated 14.9 years ago by 6.7k • written 14.9 years ago by ▴ 320
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HOPACH clustering of genes
Clustering hopach Clustering hopach
updated 15.8 years ago by ▴ 20 • written 15.8 years ago by ▴ 100
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
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ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 510
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hopach generates a wrong output
hopach
9.4 years ago • updated 9.3 years ago Alogmail2@aol.com ▴ 90
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HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 9.0 years ago by ▴ 110 • written 9.1 years ago by • 0
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R terminated when i try HOPACH in a loop,why?
hopach hopach
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 90
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971
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How to extract Hopach MSS value
Clustering hopach Clustering hopach
updated 16.2 years ago by 6.7k • written 16.2 years ago by ▴ 20
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991
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
14.8 years ago Paolo Innocenti ▴ 320
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991
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
14.6 years ago Samuel GRANJEAUD - IR/ICIM ▴ 60
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displaying clustering results in TreeView or MapleTree
Microarray Clustering Kidney Ovarian probe hopach Microarray Clustering Kidney Ovarian
12.3 years ago Mark Baumeister ▴ 40
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[BioC}: export Hopoah to treeview
hopach hopach
19.1 years ago Anthony Bosco ▴ 500
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Hopach: distancematrix and distancevector do not return identical results
documentation bug hopach euclidean distance
2.2 years ago txema.heredia • 0
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(no subject)
hopach hopach
19.1 years ago kpollard ▴ 110
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How to use distance functions from hopach package in a heatmap?
hopach hopach
18.8 years ago kpollard ▴ 110
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754
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About Hopach package
Clustering hopach Clustering hopach
18.7 years ago z3076426@student.unsw.edu.au ▴ 10
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881
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About Hopach package
hopach hopach
18.6 years ago kpollard ▴ 110
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hopach and heatmap
Clustering hopach Clustering hopach
17.9 years ago Ivan Baxter ▴ 60
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Why makeoutput() function is not included in hopach 1.4.3 version
Microarray Clustering hopach Microarray Clustering hopach
15.9 years ago Suprabhath Reddy ▴ 10
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HOPACH and .cdt which doesn't work with javatreeview
Clustering hopach Clustering hopach
15.6 years ago Sébastien Tourlet ▴ 20
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825
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Hopach cluster quality metrics
hopach hopach
15.5 years ago Khan, Anar ▴ 30
22 results • Page 1 of 1
Recent ...
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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