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hopach
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0
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replies
541
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Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
2.2 years ago
txema.heredia
• 0
1
vote
5
replies
5.7k
views
HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 9.0 years ago by
kpollard
▴ 110 • written 9.0 years ago by
ejliaw
• 0
0
votes
3
replies
1.1k
views
hopach generates a wrong output
hopach
9.3 years ago
Alogmail2@aol.com
▴ 90
0
votes
0
replies
1.5k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
12.3 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 12.5 years ago by
Nicholas Lewin-Koh
▴ 430 • written 12.5 years ago by
Kurt Hornik
▴ 10
0
votes
13
replies
2.2k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 13.9 years ago by
Richard Pearson
▴ 160 • written 14.0 years ago by
avinash gupta
▴ 130
0
votes
0
replies
989
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
14.5 years ago
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
0
replies
989
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
14.8 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
1.3k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
updated 14.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.9 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
821
views
Hopach cluster quality metrics
hopach
hopach
15.5 years ago
Khan, Anar
▴ 30
0
votes
0
replies
902
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
15.6 years ago
Sébastien Tourlet
▴ 20
0
votes
1
reply
1.1k
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 15.8 years ago by
Shannon, William
▴ 20 • written 15.8 years ago by
Nathan Harmston
▴ 100
0
votes
0
replies
770
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
15.9 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
968
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 16.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.2 years ago by
Prateek Singh
▴ 20
0
votes
1
reply
2.8k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase
genefilter
affydata
limma
simpleaffy
hopach
affyio
Biobase
genefilter
affydata
updated 17.4 years ago by
James W. MacDonald
65k • written 17.4 years ago by
Georg Otto
▴ 510
0
votes
0
replies
911
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
17.8 years ago
Ivan Baxter
▴ 60
0
votes
0
replies
879
views
About Hopach package
hopach
hopach
18.6 years ago
kpollard
▴ 110
0
votes
0
replies
750
views
About Hopach package
Clustering
hopach
Clustering
hopach
18.7 years ago
z3076426@student.unsw.edu.au
▴ 10
0
votes
0
replies
930
views
How to use distance functions from hopach package in a heatmap?
hopach
hopach
18.8 years ago
kpollard
▴ 110
0
votes
1
reply
954
views
R terminated when i try HOPACH in a loop,why?
hopach
hopach
updated 19.0 years ago by
Seth Falcon
★ 7.4k • written 19.0 years ago by
Xiao Shi
▴ 90
0
votes
0
replies
907
views
(no subject)
hopach
hopach
19.1 years ago
kpollard
▴ 110
0
votes
0
replies
869
views
[BioC}: export Hopoah to treeview
hopach
hopach
19.1 years ago
Anthony Bosco
▴ 500
22 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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