Showing : hopach • reset
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HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 9.0 years ago by ▴ 110 • written 9.1 years ago by • 0
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ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 510
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13
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Bioconductor Digest, Vol 87, Issue 10
Clustering hopach Clustering hopach
updated 13.9 years ago by ▴ 160 • written 14.0 years ago by ▴ 130
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displaying clustering results in TreeView or MapleTree
Microarray Clustering Kidney Ovarian probe hopach Microarray Clustering Kidney Ovarian
12.3 years ago Mark Baumeister ▴ 40
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
updated 14.9 years ago by 6.7k • written 14.9 years ago by ▴ 320
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3
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1.1k
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hopach generates a wrong output
hopach
9.4 years ago • updated 9.3 years ago Alogmail2@aol.com ▴ 90
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1
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1.1k
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HOPACH clustering of genes
Clustering hopach Clustering hopach
updated 15.8 years ago by ▴ 20 • written 15.8 years ago by ▴ 100
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0
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992
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
14.6 years ago Samuel GRANJEAUD - IR/ICIM ▴ 60
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992
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Problem with Hopach: "Error in dmat[ord, ]"
drosophila2 hopach drosophila2 hopach
14.9 years ago Paolo Innocenti ▴ 320
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1
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971
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How to extract Hopach MSS value
Clustering hopach Clustering hopach
updated 16.2 years ago by 6.7k • written 16.2 years ago by ▴ 20
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1
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958
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R terminated when i try HOPACH in a loop,why?
hopach hopach
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 90
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932
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How to use distance functions from hopach package in a heatmap?
hopach hopach
18.8 years ago kpollard ▴ 110
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914
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hopach and heatmap
Clustering hopach Clustering hopach
17.9 years ago Ivan Baxter ▴ 60
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910
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(no subject)
hopach hopach
19.1 years ago kpollard ▴ 110
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0
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HOPACH and .cdt which doesn't work with javatreeview
Clustering hopach Clustering hopach
15.6 years ago Sébastien Tourlet ▴ 20
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0
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881
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About Hopach package
hopach hopach
18.6 years ago kpollard ▴ 110
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874
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[BioC}: export Hopoah to treeview
hopach hopach
19.1 years ago Anthony Bosco ▴ 500
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825
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Hopach cluster quality metrics
hopach hopach
15.5 years ago Khan, Anar ▴ 30
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774
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Why makeoutput() function is not included in hopach 1.4.3 version
Microarray Clustering hopach Microarray Clustering hopach
15.9 years ago Suprabhath Reddy ▴ 10
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755
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About Hopach package
Clustering hopach Clustering hopach
18.7 years ago z3076426@student.unsw.edu.au ▴ 10
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544
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Hopach: distancematrix and distancevector do not return identical results
documentation bug hopach euclidean distance
2.2 years ago txema.heredia • 0
22 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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