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ht-seq
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Dealing with multi-overlapping and multi-mapping reads
RNA-seq
featureCounts
ht-seq
updated 23 months ago by
swbarnes2
★ 1.1k • written 23 months ago by
ag1805x
▴ 50
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Comment: I got error message about DESeqDataSetFromMatrix
by
Md. Faridul
• 0
I run the library(DESeq2) then got error message. I am new in r. How to solve this error. Error: package or namespace load failed for ‘DES…
Comment: I got error message about DESeqDataSetFromMatrix
by
Md. Faridul
• 0
Yes , I did.
Answer: I got error message about DESeqDataSetFromMatrix
by
swbarnes2
★ 1.1k
Did you do `library(DESeq2)` first? That's the error you get when the software has no idea what function you are referring to, beca…
Comment: miRNA differential expression analysis - treat as transcript level?
by
Michael Love
37k
This is very low and I think you can just use regular count-based methods safely. If you look at the ~3 features above 1 those are probably…
Comment: LogFC: how do you determine the cutoff for differentially expressed genes?
by
OE
• 0
Hi Aaron, I have been performing some Diffrential Methylation Analysis and found some logFC values really closer to 0 ( from - 0.07 to 0.1…
Votes
C: Converting numeric variables to factors in DESeq metadata
C: Converting numeric variables to factors in DESeq metadata
Comment: miRNA differential expression analysis - treat as transcript level?
At least one covariate is confounded with batch! Please remove confounded covariates and rerun ComBat
Comment: RSEM - tximport; where is effective_length information used? Implications for sc
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