Bioconductor Hta2.0

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3.8k

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oligo affycoretools hta2.0 affymetrix

updated 3.0 years ago by Yang Shi ▴ 10 • written 8.1 years ago by svlachavas ▴ 840

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1.4k

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microarray hta2.0 arrayqualitymetrics

updated 6.4 years ago by Mike Smith ★ 6.6k • written 6.4 years ago by RV ▴ 10

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1.9k

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oligo hta2.0 affymetrix microarrays memory problem

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by svlachavas ▴ 840

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3.4k

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hta2.0 transcripts

7.7 years ago giroudpaul ▴ 40

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1.8k

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pd.hta.2.0 hta2.0 affycoretools

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by relathman ▴ 20

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2.4k

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microarray scan.upc hta2.0

updated 7.4 years ago by Stephen Piccolo ▴ 600 • written 7.4 years ago by Lukas__ • 0

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1.7k

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affy rna hta2.0 r

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by Marco_aurelio • 0

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1.7k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by relathman ▴ 20

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1.8k

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oligo HTA2.0 affycoretools RMA fitProbeLevelModel

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by Guido Hooiveld ★ 4.1k

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401

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hta20transcriptcluster.db org.Sc.sgd.db HTA2.0 MicroRNAArrayData

9 weeks ago Yao Lipu • 0

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1.5k

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hta2.0 limma batch effect affymetrix microarrays ComBat

8.0 years ago svlachavas ▴ 840

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1.3k

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affxparser cdf hta2.0

7.9 years ago relathman ▴ 20

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2.6k

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hta2.0 annotation transcripts

updated 6.7 years ago by svlachavas ▴ 840 • written 6.7 years ago by Biomed • 0

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1.4k

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HTA2.0 microarray affy r

4.6 years ago Marco_aurelio • 0

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1.1k

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affyPLM fitPLM hta2.0

8.6 years ago Guido Hooiveld ★ 4.1k

15 results • Page 1 of 1

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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