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Comment: edgeR: the F-statistics changed after removing lowly expressed gene
by
Gordon Smyth
45k
There is nothing to be gained by doing analyses without filtering. We don't recommend it.
Comment: edgeR: the F-statistics changed after removing lowly expressed gene
by
Pei
•
0
Thank you Prof. Smyth!
In my case, I found that
number of significant genes tend to decrease after filtering when using glmQLFTest
but
num…
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
by
Gordon Smyth
45k
glmQLFTest() function is designed to be used after expression filtering. You should apply expression filtering, regardless of whether it re…
Comment: EnrichGO not working with db created from annotationhub
by
Lucía
•
0
I have this, can this be used for GO in R?
```
115709282 LOC115709282 phenylalanine ammonia-lyase
115699364 LOC115699364 …
Answer: EnrichGO not working with db created from annotationhub
by
Lucía
•
0
Hi, thanks so much for all your replies and running the code and confirming.
I have not seen any GO term annotations for Cannabis so far…
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