Bioconductor Htseqcounts

Showing : htseqcounts • reset

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deseq2 deseq edgeR rnaseq htseqcounts

5.6 years ago Deepali • 0

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1.6k

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edger htseqcounts

updated 5.7 years ago by Gordon Smyth 48k • written 5.7 years ago by Bioinformatics ▴ 30

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1.7k

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R summarizeoverlaps htseqcounts

updated 5.9 years ago by thokall ▴ 160 • written 5.9 years ago by Walter F. Baumann ▴ 10

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3.8k

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htseqcounts edger

updated 11 months ago by Randy • 0 • written 6.1 years ago by mictadlo ▴ 10

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2.9k

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edger htseqcounts

updated 6.1 years ago by Gordon Smyth 48k • written 6.1 years ago by mictadlo ▴ 10

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htseqcounts star rnaseq

6.1 years ago Ahdee ▴ 50

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featurecounts SAM htseqcounts

updated 11 weeks ago by Yang Liao ▴ 380 • written 6.4 years ago by courtney.stairs • 0

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3.1k

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chipseq deseq2 htseqcounts

updated 7 months ago by mhashan.j ▴ 10 • written 6.6 years ago by JunLVI ▴ 40

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991

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edger htseqcounts rnaseq

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by romsdahl • 0

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932

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dexseq_count dexseq htseqcounts

7.0 years ago as1023 • 0

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1.5k

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deseq2 pca tximportdata htseqcounts

updated 7.2 years ago by Michael Love 40k • written 7.2 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 7.3 years ago by Gordon Smyth 48k • written 7.3 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10

Thanks for your help, problem solved :)

Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k

That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…

Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40

Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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