Bioconductor Htseqgenie

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HTSeqGenie BAM

updated 14 days ago by James W. MacDonald 65k • written 14 days ago by zh9118 • 0

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HTSeqGenie

7 months ago • updated 6 months ago zh9118 • 0

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HTSeqGenie

13 months ago zh9118 • 0

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HTSeqGenie

19 months ago Maryam.sed1400 • 0

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HTSeqGenie

20 months ago Maryam.sed1400 • 0

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HTSeqGenie

updated 7.7 years ago by Jens Reeder ▴ 40 • written 7.7 years ago by Thomas Sandmann ▴ 90

6 results • Page 1 of 1

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by marka • 0

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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