Showing : htseqtools • reset
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Which library now contains the ssdCoverage command that used to be found in the htseqtools package for R version 4.0.1 ?
Deprecation chipseq htseqtools Bioconductor
updated 14 months ago by ▴ 280 • written 14 months ago by • 0
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HTSeq-count on several gff3/gtf files for use in DESeq2
htseqtools deseq2 counts cuffdiff
6.3 years ago Jon Bråte ▴ 180
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htSeqTools errors
Coverage htSeqTools Coverage htSeqTools
updated 10.2 years ago by ★ 6.7k • written 10.3 years ago by ▴ 80
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GenomicRanges requires a IRanges version not available in the repository
GenomicRanges htSeqTools GenomicRanges htSeqTools
updated 10.3 years ago by 6.6k • written 10.3 years ago by ▴ 80
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htSeqTools - filtered reads > BED?
IRanges htSeqTools IRanges htSeqTools
updated 10.3 years ago by 11k • written 10.3 years ago by ▴ 70
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htSeqTools: using GRanges and GRangesList
convert htSeqTools convert htSeqTools
10.3 years ago Oscar Reina ▴ 20
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htSeqTools - naming RangedData objects?
htSeqTools ASSIGN htSeqTools ASSIGN
updated 10.3 years ago by 11k • written 10.3 years ago by ▴ 70
7 results • Page 1 of 1
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Comment: EnrichGO not working with db created from annotationhub by Lucía • 0
I have this, can this be used for GO in R? ``` 115709282 LOC115709282 phenylalanine ammonia-lyase 115699364 LOC115699364 …
Answer: EnrichGO not working with db created from annotationhub by Lucía • 0
Hi, thanks so much for all your replies and running the code and confirming. I have not seen any GO term annotations for Cannabis so far…
Comment: TPM data Differential expression analysis by Gordon Smyth 45k
I have nothing to add my previous answer, which seems quite clear and umbiguous.
Answer: Difference between raw counts and featureCounts for DESeq2 by swbarnes2 ★ 1.0k
The count output from featureCounts is suitable for use with DESeq.
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70
Hi H. Do you have any clues what the bug or problem could be? thanks. Jiping
Votes
Answer: Difference between raw counts and featureCounts for DESeq2
Comment: Case Studies Data Missing in Rsubread
Answer: rtracklayer S.h
Answer: rtracklayer S.h
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
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