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import.bw rtracklayer http RStudio

updated 2.8 years ago by Michael Lawrence 11k • written 2.8 years ago by Søren • 0

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arrayexpress xml rcurl http EBI

updated 6.0 years ago by Wolfgang Huber 13k • written 6.0 years ago by Bernd Klaus ▴ 610

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import.bw rtracklayer Windows http

22 months ago sla • 0

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security http source installation

updated 8.3 years ago by Dan Tenenbaum ★ 8.2k • written 8.3 years ago by will.townes • 0

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gviz gviz-package rtracklayer http

5.7 years ago enricoferrero ▴ 660

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genomicdatacommons tcga gdc rest http

updated 4.7 years ago by Sean Davis 21k • written 4.7 years ago by mk ▴ 20

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Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10

Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …

Comment: Suggested package missing from Development version of Bioconductor by shepherl 3.5k

Is your package in review or already in Bioconductor? Its harder if it is in review because we can't tell that the package has or can build…

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Comment: DiffBind: dba.plotProfile(profiles)

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

Normalisation of data using DESeq2 with multi-groups

Answer: Normalisation of data using DESeq2 with multi-groups

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