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import.bw rtracklayer http RStudio

updated 4.0 years ago by Michael Lawrence ★ 11k • written 4.0 years ago by Søren • 0

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arrayexpress xml rcurl http EBI

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import.bw rtracklayer Windows http

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security http source installation

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by will.townes • 0

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gviz gviz-package rtracklayer http

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genomicdatacommons tcga gdc rest http

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downloads http429 http Bioconductor

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Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

Comment: RSubread output significantly different from bash Subread output by Aimee • 0

Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…

Answer: RSubread output significantly different from bash Subread output by ATpoint ★ 4.6k

The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…

Comment: Can't post a question? by Aimee • 0

I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…

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Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

Comment: How to annotate a limma Elist raw class object with an annotation file

QSEA- Extraction of Normalized methylation across the samples

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Teacher to Michael Love 43k

Popular Question to Dario Strbenac ★ 1.5k

Scholar to ATpoint ★ 4.6k