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Comment: Diffbind "No genome detected"
by
kyliecode
•
0
Hi Dr. Stark,
Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio)
by
Michael Love
40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure.
Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode
by
Habil Zare
▴
170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file
by
jenniferbrowngates
•
0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
Comment: Several questions about the workflow using DESeq2 to process RNA data
by
ATpoint
★
2.9k
This is all covered in the vignette.
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