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hugene20
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3
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2.0k
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Reading Affymetrix data from pd.hugene.2.0.st using affy
affy
pd.hugene.2.0.st
hugene20
annotation
microarray
7.2 years ago
kanacska
▴ 10
0
votes
3
replies
1.9k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray
annotation
hgu133plus2
hugene20
7.2 years ago
kanacska
▴ 10
4
votes
10
replies
1.6k
views
Limma/oligo always crashing
limma
microarray
pd.hugene.2.0.st
hugene20
oligo
6.3 years ago
hakimelakhrass
• 0
0
votes
4
replies
1.8k
views
HUgene 2.0 analyses heatmap
hugene20
heatmap
affymetrixchip
updated 7.0 years ago by
alakatos
▴ 120 • written 7.0 years ago by
kanacska
▴ 10
2
votes
2
replies
2.2k
views
HuGene 2.0 ST CDF files and xps
xps
hugene20
updated 7.6 years ago by
cstrato
★ 3.9k • written 7.7 years ago by
Alison Ziesel
▴ 60
3
votes
10
replies
1.2k
views
Still need help identifying a good workflow for finding DEG in hugene 2.0 st
microarray
hugene20
limma
oligo
updated 6.3 years ago by
Aaron Lun
★ 27k • written 6.3 years ago by
hakimelakhrass
• 0
0
votes
0
replies
2.3k
views
DE analysis pipeline with Hugene 2.0 ST arrays
hugene20
microarray
limma
limma paired analysis
oligo
6.3 years ago
hakimelakhrass
• 0
7 results • Page
1 of 1
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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! I got it now!
Comment: Reading multiple data segments from FCS 3.0 file
by
SamGG
▴ 270
You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…
Answer: how to make a group to apply the data to CAMERA
by
Gordon Smyth
45k
See the [limma User's Guide](https://www.bioconductor.org/packages/3.15/bioc/vignettes/limma/inst/doc/usersguide.pdf) for how to undertake …
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
To add to the extensive discussion above, you may also want to have a look at the so-called UPC algorithm, available in the [package][1] `S…
Answer: How to best visualize multi-level transcriptomics experiment data?
by
Gordon Smyth
45k
> One way is to extract the differentially expressed genes with p.val = 0.05 and logFC = +/-1.0 I strongly recommend using FDR < 0.05 and…
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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