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hugene20
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4
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10
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2.3k
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Limma/oligo always crashing
limma
microarray
pd.hugene.2.0.st
hugene20
oligo
8.2 years ago
hakimelakhrass
• 0
3
votes
10
replies
1.9k
views
Still need help identifying a good workflow for finding DEG in hugene 2.0 st
microarray
hugene20
limma
oligo
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
hakimelakhrass
• 0
2
votes
2
replies
2.8k
views
HuGene 2.0 ST CDF files and xps
xps
hugene20
updated 9.5 years ago by
cstrato
★ 3.9k • written 9.5 years ago by
Alison Ziesel
▴ 60
0
votes
0
replies
2.7k
views
DE analysis pipeline with Hugene 2.0 ST arrays
hugene20
microarray
limma
limma paired analysis
oligo
8.1 years ago
hakimelakhrass
• 0
0
votes
4
replies
2.3k
views
HUgene 2.0 analyses heatmap
hugene20
heatmap
affymetrixchip
updated 8.9 years ago by
alakatos
▴ 130 • written 8.9 years ago by
kanacska
▴ 10
0
votes
3
replies
2.5k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy
pd.hugene.2.0.st
hugene20
annotation
microarray
9.0 years ago
kanacska
▴ 10
0
votes
3
replies
2.4k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray
annotation
hgu133plus2
hugene20
9.0 years ago
kanacska
▴ 10
7 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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Michael Love
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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