Biostar Idat

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idat illumina limma read.idat

updated 7 months ago by Gordon Smyth 43k • written 7 months ago by bastien_chassagnol • 0

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minfi methylation idat samplesheet

updated 3 months ago by sci_djw • 0 • written 2.2 years ago by researcher • 0

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8

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beadarray lumi illuminaio idat

updated 4 weeks ago by mad6kj • 0 • written 7.7 years ago by Sean Davis 21k

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Comment: DESeq2 - understanding intercept and contrasts by sarah-spie • 0

Thank you, dear Michael, and thank you for being so active in this forum in general! Could you have a look at this line, in which I wand to…

Answer: tximeta countsFromAbundance for downstream analysis by Michael Love 33k

The counts will not be closely correlated to the TPM across genes, because the gene length is included in the gene count but not in the TPM…

Answer: DESeq2 - understanding intercept and contrasts by Michael Love 33k

For questions on setting up the statistical design and contrasts, I recommend to consult with a local statistician or someone familiar with…

Answer: Interaction terms and selection of coef in normal and shrunk results by Michael Love 33k

Please see the diagram in the vignette on interactions, but for further questions on setting up the design, I recommend to consult with a l…

Answer: about baseMean in DEseq2 by Michael Love 33k

More information about the columns is here: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#access-…

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A: plotPCA - how to add labels to a PCA plot

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Scholar to Michael Lawrence 11k