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idat
•
reset
0
votes
10
replies
1.4k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
7.5 years ago
lacion
• 0
4
votes
10
replies
1.4k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 6.9 years ago by
Mike Smith
★ 5.7k • written 6.9 years ago by
willj
▴ 30
3
votes
9
replies
4.3k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 8 months ago by
Gordon Smyth
46k • written 8.7 years ago by
Sean Davis
21k
0
votes
8
replies
3.4k
views
Error using read.metharray.exp in minfi to read idat files
minfi
read.metharray.exp
idat
HM450k
4.8 years ago
poojitha.stemcell
▴ 10
4
votes
8
replies
6.7k
views
how to use idat file for analyses in bioconductor
microarray
illumina
idat
updated 6.5 years ago by
Gordon Smyth
46k • written 6.5 years ago by
kritikamish99
▴ 10
11
votes
5
replies
1.7k
views
Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "detection_pval" given by GenomeStudio?
lumidat
idat
microarray
illumina
updated 6.9 years ago by
Mark Cowley
▴ 400 • written 6.9 years ago by
willj
▴ 30
2
votes
4
replies
712
views
read.idat function misleading error when reading compressed files
idat
illumina
limma
read.idat
updated 20 months ago by
Gordon Smyth
46k • written 20 months ago by
bastien_chassagnol
• 0
0
votes
3
replies
1.3k
views
Unknown annotation in the RGChannelSetExtended object
minfi
idat
annotation
EPIC
updated 5.4 years ago by
xue.zhang
• 0 • written 5.5 years ago by
Frocha
▴ 10
0
votes
2
replies
1.2k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 5.3 years ago by
Guido Hooiveld
★ 3.3k • written 5.3 years ago by
Ellen O
• 0
0
votes
2
replies
1.3k
views
Creating Intensity GDS file for the R package GWAStools
gwastools
idat
gds format
updated 5.1 years ago by
Stephanie M. Gogarten
▴ 820 • written 5.1 years ago by
catbriggsm
• 0
1
vote
2
replies
1.8k
views
minfi error in read.metharray
minfi
methylation
idat
samplesheet
updated 16 months ago by
sci_djw
• 0 • written 3.3 years ago by
researcher
• 0
0
votes
2
replies
1.5k
views
reading .idat files using genotype.Illumina in crlmm
crlmm
idat
updated 7.2 years ago by
Matthew Ritchie
▴ 1000 • written 7.2 years ago by
Shi, Tao
▴ 720
0
votes
1
reply
1.4k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 5.2 years ago by
Matthew Ritchie
▴ 1000 • written 5.2 years ago by
Guido Hooiveld
★ 3.3k
13 results • Page
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Recent ...
Replies
Comment: conditional command within GRanges
by
Basti
▴ 390
I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Great... now it is same. but still I have problem with four possibilities during using IsoformSwitchAnalyzeR. Knidly, any idea where is the…
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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