Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
idat
•
reset
0
votes
10
replies
2.1k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
9.1 years ago
lacion
• 0
4
votes
10
replies
2.1k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 8.5 years ago by
Mike Smith
★ 6.5k • written 8.6 years ago by
willj
▴ 30
3
votes
9
replies
5.6k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.3 years ago by
Gordon Smyth
50k • written 10.3 years ago by
Sean Davis
21k
0
votes
8
replies
5.0k
views
Error using read.metharray.exp in minfi to read idat files
minfi
read.metharray.exp
idat
HM450k
6.4 years ago
poojitha.stemcell
▴ 10
4
votes
8
replies
10k
views
how to use idat file for analyses in bioconductor
microarray
illumina
idat
updated 8.1 years ago by
Gordon Smyth
50k • written 8.1 years ago by
kritikamish99
▴ 10
11
votes
5
replies
2.3k
views
Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "detection_pval" given by GenomeStudio?
lumidat
idat
microarray
illumina
updated 8.5 years ago by
Mark Cowley
▴ 400 • written 8.5 years ago by
willj
▴ 30
2
votes
4
replies
1.6k
views
read.idat function misleading error when reading compressed files
idat
illumina
limma
read.idat
updated 3.3 years ago by
Gordon Smyth
50k • written 3.3 years ago by
bastien_chassagnol
• 0
0
votes
3
replies
2.0k
views
Unknown annotation in the RGChannelSetExtended object
minfi
idat
annotation
EPIC
updated 7.0 years ago by
xue.zhang
• 0 • written 7.1 years ago by
Frocha
▴ 20
0
votes
2
replies
1.8k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 6.9 years ago by
Guido Hooiveld
★ 3.9k • written 6.9 years ago by
Ellen O
• 0
0
votes
2
replies
1.7k
views
Creating Intensity GDS file for the R package GWAStools
gwastools
idat
gds format
updated 6.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 6.7 years ago by
catbriggsm
• 0
1
vote
2
replies
3.5k
views
minfi error in read.metharray
minfi
methylation
idat
samplesheet
updated 2.9 years ago by
sci_djw
• 0 • written 4.9 years ago by
researcher
• 0
0
votes
2
replies
1.9k
views
reading .idat files using genotype.Illumina in crlmm
crlmm
idat
updated 8.8 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Shi, Tao
▴ 720
0
votes
1
reply
1.8k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 6.9 years ago by
Matthew Ritchie
▴ 1000 • written 6.9 years ago by
Guido Hooiveld
★ 3.9k
13 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Locations
• All
UPF, Barcelona, Spain,
3 minutes ago
Denmark,
16 minutes ago
United States,
40 minutes ago
United States,
42 minutes ago
France,
46 minutes ago
Traffic: 893 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6