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grid.chromosome in quantsmooth, without cytobands?
idiogram
idiogram
14.1 years ago
Paul Shannon
★ 1.1k
0
votes
3
replies
1.3k
views
ploting paired-end reads using GenomeGraphs
idiogram
GenomeGraphs
idiogram
GenomeGraphs
updated 14.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 14.9 years ago by
Ramzi TEMANNI
▴ 160
0
votes
0
replies
2.5k
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How to plot gene on their chromosome?
Annotation
Cancer
geneplotter
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rtracklayer
Annotation
Cancer
geneplotter
idiogram
15.5 years ago
Martin Morgan
25k
0
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1.1k
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FW: How to plot microRNA chromosome location
Organism
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Organism
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16.0 years ago
Dykema, Karl
▴ 90
0
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1
reply
2.0k
views
karyogram
idiogram
GenomeGraphs
idiogram
GenomeGraphs
updated 16.4 years ago by
Oosting, J. PATH
▴ 550 • written 16.4 years ago by
Michael Gormley
▴ 60
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Comment: Volcano plot has many values around zero
by
Michael Love
42k
It's positive over zero or nearly so.
Answer: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.
Comment: Volcano plot has many values around zero
by
mjun
• 0
Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks
Comment: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…
Votes
Comment: Weird looking volcano plot
Volcano plot has many values around zero
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
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