Showing : igraph • reset
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402
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GRanges list convert into igraph format
GRanges igraph
updated 8 months ago by ▴ 720 • written 8 months ago by ▴ 660
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0
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340
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coexpression networks
WGCNA igraph
9 months ago María José • 0
0
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0
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841
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Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
2.7 years ago Chantel • 0
0
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2
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2.5k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 3.8 years ago by 25k • written 3.8 years ago by • 0
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1
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1.2k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 2.1 years ago by 48k • written 4.5 years ago by • 0
0
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2
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1000
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STRING_id mismatch with STRINGdb
STRINGdb igraph
4.5 years ago Samuel Lee • 0
2
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5
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1.1k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 50
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1
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730
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igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 10
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809
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igraph PoTRA error
graph pathways igraph
5.5 years ago genomic8328 ▴ 10
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2
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2.9k
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get vertex xy coords from igraph mst plot
igraph
5.9 years ago Andrew Box ▴ 10
1
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1
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1.3k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
6.1 years ago lljotall ▴ 10
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2
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1.8k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 6.3 years ago by • 0 • written 7.8 years ago by • 0
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0
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1.5k
views
failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
6.7 years ago jan.soderman • 0
0
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0
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827
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
7.3 years ago Abhishek Pratap ▴ 190
2
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2
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1.1k
views
taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 7.3 years ago by ▴ 470 • written 7.4 years ago by ▴ 40
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0
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1.0k
views
read tree fails for large trees
RamiGO R gene ontology igraph
7.6 years ago bkellman • 0
2
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4
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2.4k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 7.7 years ago by 16k • written 7.7 years ago by ▴ 40
0
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1
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1.7k
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Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 7.9 years ago by • 0 • written 7.9 years ago by ▴ 10
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4
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1.8k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 8.1 years ago by ▴ 20 • written 8.1 years ago by ▴ 130
19 results • Page 1 of 1
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Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230
Thanks! This works for me.
Answer: Manual creation of qPCRset does not work by James W. MacDonald 63k
``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …
Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message by hanna.g • 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k
1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…
Votes
Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
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