Bioconductor Igraph

Showing : igraph • reset

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3.2k

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igraph

6.5 years ago Andrew Box ▴ 10

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1.9k

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FEM igraph

updated 8.4 years ago by andrew • 0 • written 8.5 years ago by sirintra ▴ 10

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2.0k

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igraph spade

updated 6.9 years ago by johnheath346 • 0 • written 8.4 years ago by duncanjamesmurray01 • 0

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2.7k

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igraph

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Angel ▴ 40

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1.2k

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igraph software error adjacency matrix

updated 7.9 years ago by Paul Shannon ▴ 470 • written 7.9 years ago by Angel ▴ 40

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2.0k

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software error geNet igraph genetclassifier

updated 8.7 years ago by saibar ▴ 20 • written 8.7 years ago by alakatos ▴ 130

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894

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igraph miR2Pathway Pathway page_rank

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by genomic8328 ▴ 10

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1.4k

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scater scran igraph scRNA-Seq rots

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by hamza_karakurt ▴ 50

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1.5k

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QuACN igraph

6.7 years ago lljotall ▴ 10

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1.1k

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RamiGO R gene ontology igraph

8.2 years ago bkellman • 0

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977

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graph pathways igraph

6.1 years ago genomic8328 ▴ 10

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601

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GRanges igraph

updated 14 months ago by Lluís Revilla Sancho ▴ 730 • written 15 months ago by Bogdan ▴ 670

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514

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WGCNA igraph

16 months ago María José • 0

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1.2k

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STRINGdb igraph

5.0 years ago Samuel Lee • 0

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1.5k

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igraph network gene corexpression rna-seq

updated 2.7 years ago by Gordon Smyth 50k • written 5.0 years ago by aiswaryabioinfo • 0

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2.8k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by crgarcia • 0

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1.0k

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igraph networkanalysis Phylogenetics phyloseq

3.3 years ago Chantel • 0

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954

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ppi network analysis igraph

7.9 years ago Abhishek Pratap ▴ 190

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1.6k

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installation package installation topaseq igraph LD_LIBRARY_PATH

7.2 years ago jan.soderman • 0

19 results • Page 1 of 1

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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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