Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
igraph
•
reset
0
votes
2
replies
3.2k
views
get vertex xy coords from igraph mst plot
igraph
6.5 years ago
Andrew Box
▴ 10
0
votes
1
reply
1.9k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM
igraph
updated 8.4 years ago by
andrew
• 0 • written 8.5 years ago by
sirintra
▴ 10
0
votes
2
replies
2.0k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
updated 6.9 years ago by
johnheath346
• 0 • written 8.4 years ago by
duncanjamesmurray01
• 0
2
votes
4
replies
2.7k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
Angel
▴ 40
2
votes
2
replies
1.2k
views
taking intersection between 6 networks by graph.intersect
igraph
software error
adjacency matrix
updated 7.9 years ago by
Paul Shannon
▴ 470 • written 7.9 years ago by
Angel
▴ 40
0
votes
4
replies
2.0k
views
Package "geNetClassifier": is this an "igraph' error?
software error
geNet
igraph
genetclassifier
updated 8.7 years ago by
saibar
▴ 20 • written 8.7 years ago by
alakatos
▴ 130
0
votes
1
reply
894
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
genomic8328
▴ 10
2
votes
5
replies
1.4k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater
scran
igraph
scRNA-Seq
rots
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
hamza_karakurt
▴ 50
1
vote
1
reply
1.5k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN
igraph
6.7 years ago
lljotall
▴ 10
0
votes
0
replies
1.1k
views
read tree fails for large trees
RamiGO
R
gene ontology
igraph
8.2 years ago
bkellman
• 0
0
votes
0
replies
977
views
igraph PoTRA error
graph
pathways
igraph
6.1 years ago
genomic8328
▴ 10
0
votes
1
reply
601
views
GRanges list convert into igraph format
GRanges
igraph
updated 14 months ago by
Lluís Revilla Sancho
▴ 730 • written 15 months ago by
Bogdan
▴ 670
0
votes
0
replies
514
views
coexpression networks
WGCNA
igraph
16 months ago
María José
• 0
0
votes
2
replies
1.2k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
5.0 years ago
Samuel Lee
• 0
0
votes
1
reply
1.5k
views
igraph clustering for gene coexpression network
igraph
network
gene corexpression
rna-seq
updated 2.7 years ago by
Gordon Smyth
50k • written 5.0 years ago by
aiswaryabioinfo
• 0
0
votes
2
replies
2.8k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update
Phyloseq
igraph
phangorn
Tutorial
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
crgarcia
• 0
0
votes
0
replies
1.0k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
3.3 years ago
Chantel
• 0
0
votes
0
replies
954
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi
network analysis
igraph
7.9 years ago
Abhishek Pratap
▴ 190
0
votes
0
replies
1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.2 years ago
jan.soderman
• 0
19 results • Page
1 of 1
Recent ...
Replies
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
Awards
• All
Popular Question
to
paria.alipour
• 0
Popular Question
to
Eman
• 0
Popular Question
to
James W. MacDonald
65k
Scholar
to
nhaus
▴ 30
Popular Question
to
shepherl
3.8k
Locations
• All
WEHI, Melbourne, Australia,
3 minutes ago
France,
11 minutes ago
Sweden,
13 minutes ago
France,
31 minutes ago
France,
40 minutes ago
Traffic: 794 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6