Bioconductor Igraph

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1.4k

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scater scran igraph scRNA-Seq rots

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by hamza_karakurt ▴ 50

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2.7k

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igraph

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Angel ▴ 40

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2.0k

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software error geNet igraph genetclassifier

updated 8.7 years ago by saibar ▴ 20 • written 8.7 years ago by alakatos ▴ 130

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3.2k

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igraph

6.5 years ago Andrew Box ▴ 10

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2.0k

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igraph spade

updated 6.9 years ago by johnheath346 • 0 • written 8.4 years ago by duncanjamesmurray01 • 0

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1.2k

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igraph software error adjacency matrix

updated 7.9 years ago by Paul Shannon ▴ 470 • written 7.9 years ago by Angel ▴ 40

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1.2k

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STRINGdb igraph

5.1 years ago Samuel Lee • 0

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2.8k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by crgarcia • 0

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1.5k

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QuACN igraph

6.7 years ago lljotall ▴ 10

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894

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igraph miR2Pathway Pathway page_rank

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by genomic8328 ▴ 10

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1.9k

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FEM igraph

updated 8.4 years ago by andrew • 0 • written 8.5 years ago by sirintra ▴ 10

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604

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GRanges igraph

updated 15 months ago by Lluís Revilla Sancho ▴ 730 • written 15 months ago by Bogdan ▴ 670

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1.5k

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igraph network gene corexpression rna-seq

updated 2.7 years ago by Gordon Smyth 50k • written 5.1 years ago by aiswaryabioinfo • 0

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954

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ppi network analysis igraph

7.9 years ago Abhishek Pratap ▴ 190

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1.6k

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installation package installation topaseq igraph LD_LIBRARY_PATH

7.2 years ago jan.soderman • 0

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1.1k

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RamiGO R gene ontology igraph

8.2 years ago bkellman • 0

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977

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graph pathways igraph

6.1 years ago genomic8328 ▴ 10

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514

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WGCNA igraph

16 months ago María José • 0

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1.1k

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igraph networkanalysis Phylogenetics phyloseq

3.3 years ago Chantel • 0

19 results • Page 1 of 1

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Comment: Finding DEGs by using edgeR by Gordon Smyth 50k

Filtering (removing lowly expressed genes) has nothing to do with normalization. It isn't clear why not subsetting would cause any difficu…

Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0

Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…

Comment: Finding DEGs by using edgeR by prity6459 • 0

Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …

Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k

It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…

Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k

Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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