Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
igraph
•
reset
2
votes
5
replies
1.4k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater
scran
igraph
scRNA-Seq
rots
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
hamza_karakurt
▴ 50
2
votes
4
replies
2.7k
views
getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
Angel
▴ 40
2
votes
2
replies
1.2k
views
taking intersection between 6 networks by graph.intersect
igraph
software error
adjacency matrix
updated 7.9 years ago by
Paul Shannon
▴ 470 • written 7.9 years ago by
Angel
▴ 40
1
vote
1
reply
1.5k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN
igraph
6.6 years ago
lljotall
▴ 10
0
votes
0
replies
942
views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi
network analysis
igraph
7.8 years ago
Abhishek Pratap
▴ 190
0
votes
0
replies
1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.2 years ago
jan.soderman
• 0
0
votes
2
replies
3.2k
views
get vertex xy coords from igraph mst plot
igraph
6.4 years ago
Andrew Box
▴ 10
0
votes
0
replies
967
views
igraph PoTRA error
graph
pathways
igraph
6.0 years ago
genomic8328
▴ 10
0
votes
1
reply
872
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
genomic8328
▴ 10
0
votes
2
replies
1.2k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
5.0 years ago
Samuel Lee
• 0
0
votes
1
reply
1.5k
views
igraph clustering for gene coexpression network
igraph
network
gene corexpression
rna-seq
updated 2.6 years ago by
Gordon Smyth
50k • written 5.0 years ago by
aiswaryabioinfo
• 0
0
votes
2
replies
2.8k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update
Phyloseq
igraph
phangorn
Tutorial
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
crgarcia
• 0
0
votes
0
replies
1.0k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
3.2 years ago
Chantel
• 0
0
votes
1
reply
576
views
GRanges list convert into igraph format
GRanges
igraph
updated 14 months ago by
Lluís Revilla Sancho
▴ 730 • written 14 months ago by
Bogdan
▴ 670
0
votes
4
replies
2.0k
views
Package "geNetClassifier": is this an "igraph' error?
software error
geNet
igraph
genetclassifier
updated 8.7 years ago by
saibar
▴ 20 • written 8.7 years ago by
alakatos
▴ 130
0
votes
0
replies
483
views
coexpression networks
WGCNA
igraph
16 months ago
María José
• 0
0
votes
1
reply
1.9k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM
igraph
updated 8.4 years ago by
andrew
• 0 • written 8.4 years ago by
sirintra
▴ 10
0
votes
2
replies
2.0k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
updated 6.8 years ago by
johnheath346
• 0 • written 8.3 years ago by
duncanjamesmurray01
• 0
0
votes
0
replies
1.1k
views
read tree fails for large trees
RamiGO
R
gene ontology
igraph
8.1 years ago
bkellman
• 0
19 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
Awards
• All
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Teacher
to
Peter Langfelder
★ 2.9k
Locations
• All
Spain,
3 minutes ago
EMBL Heidelberg,
5 minutes ago
Denmark,
9 minutes ago
WEHI, Melbourne, Australia,
12 minutes ago
Sweden,
13 minutes ago
Traffic: 706 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6