Bioconductor Illumina450k

Showing : illumina450k • reset

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illumina450k limma lme4 lmer

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by DSP • 0

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minfi illumina450k methylation

7.5 years ago hrishi27n ▴ 20

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microarray minfi methylumi illumina450k

7.4 years ago • updated 6.6 years ago poojitha.stemcell ▴ 10

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ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

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limma illumina450k lmfit

updated 7.5 years ago by Ryan C. Thompson ★ 7.9k • written 7.5 years ago by DSP • 0

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rnbeads illumina450k

updated 8.5 years ago by pavlo.lutsik ▴ 10 • written 8.5 years ago by Brian Smith ▴ 120

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champ methylation illuminahumanmethylation450k.db illumina450k

updated 7.4 years ago by Yuan Tian ▴ 90 • written 7.4 years ago by hrishi27n ▴ 20

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minfi illumina illumina450k methylation R

6.8 years ago ezrabekele17 • 0

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minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.3 years ago by pm2015 • 0

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ChAMP methylation illumina450k

8.0 years ago Daniel E. Weeks ▴ 30

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minfi software error methylation illumina450k

8.3 years ago pm2015 • 0

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minfi bumphunter DNA methylation illumina450k

updated 7.9 years ago by James W. MacDonald 65k • written 7.9 years ago by fleur_p90 • 0

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minfi methylation illumina450k

7.5 years ago hrishi27n ▴ 20

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illumina450k methylation

8.0 years ago niutster • 0

14 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0