Bioconductor Illuminahumanmethylation450kanno.ilmn12.hg19

Showing : illuminahumanmethylation450kanno.ilmn12.hg19 • reset

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illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation

updated 24 months ago by Will • 0 • written 8.6 years ago by metamaden ▴ 10

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IlluminaHumanMethylation450kanno.ilmn12.hg19

3.3 years ago whirlsyu • 0

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IlluminaHumanMethylation450kanno.ilmn12.hg19 R

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by nipabasak • 0

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minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19

updated 7.1 years ago by Tim Peters ▴ 170 • written 7.1 years ago by poojitha.stemcell ▴ 10

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FDb.InfiniumMethylation.hg19 IlluminaHumanMethylation450kanno.ilmn12.hg19

7.8 years ago CPR ▴ 30

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minfi illuminahumanmethylation450kanno.ilmn12.hg19 illuminahumanmethylation450k.db

updated 8.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.7 years ago by AST ▴ 60

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.0 years ago alejandretheodore • 0

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IlluminaHumanMethylation450kanno.ilmn12.hg19

9.1 years ago richa.gupta • 0

8 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0