Bioconductor Import

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1.9k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 6 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

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681

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.gpr raw Agilent MicroarrayData import

updated 2.5 years ago by Gordon Smyth 50k • written 2.5 years ago by irina.st.louis4 • 0

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1.3k

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import

2.8 years ago Ofelia • 0

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1.7k

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software error BigWig import windows

4.1 years ago • updated 4.0 years ago lsilva.m • 0

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804

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ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

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1.3k

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rtracklayer fasta import Biostrings

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by k.vitting.seerup ▴ 120

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3.0k

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bigwig rtracklayer import granges grangeslist

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.1k

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rtracklayer gff gtf import import.gff3

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by Marlin ▴ 20

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1.1k

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rtracklayer bigwig import

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by zx8754 ▴ 10

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2.3k

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rtracklayer import bed files

8.0 years ago jmr • 0

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2.6k

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rtracklayer import bed

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Peter Hickey ▴ 740

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Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

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Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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