Bioconductor Import

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3.0k

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bigwig rtracklayer import granges grangeslist

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by Assa Yeroslaviz ★ 1.5k

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2.6k

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rtracklayer import bed

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Peter Hickey ▴ 740

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2.4k

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rtracklayer import bed files

8.0 years ago jmr • 0

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1.9k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 6 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

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1.7k

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software error BigWig import windows

4.1 years ago lsilva.m • 0

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1.3k

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rtracklayer fasta import Biostrings

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by k.vitting.seerup ▴ 120

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1.3k

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import

2.8 years ago Ofelia • 0

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1.1k

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rtracklayer bigwig import

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by zx8754 ▴ 10

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1.1k

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rtracklayer gff gtf import import.gff3

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by Marlin ▴ 20

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808

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ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

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684

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.gpr raw Agilent MicroarrayData import

updated 2.5 years ago by Gordon Smyth 50k • written 2.5 years ago by irina.st.louis4 • 0

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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