Showing : impute • reset
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impute.knn produces different results based on matrix order
impute
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
1
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2
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278
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Impute does not work
impute
8 weeks ago Laura • 0
1
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4
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6.1k
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Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 12 months ago by • 0 • written 2.2 years ago by • 0
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0
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787
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Introduction to DEP - data imputation
DEP impute
2.6 years ago catherine.li • 0
0
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1
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1.6k
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Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA impute sva
updated 2.9 years ago by ▴ 50 • written 2.9 years ago by • 0
2
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3
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2.1k
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Imputation method selection (mass spectrometry) bimodal distribution
impute missing value imputation DEP massspectrometry
updated 6.4 years ago by 1.6k • written 6.4 years ago by ▴ 60
2
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3
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1.6k
views
champ.impute doesn't update beta matrix
champ impute bioconductor
updated 7.1 years ago by ▴ 90 • written 7.1 years ago by ▴ 10
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0
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1.1k
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Bugs for impute package
bugs impute
7.6 years ago Shicheng Guo • 0
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1.5k
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Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data missing value imputation impute MICE bioconductor
8.5 years ago svlachavas ▴ 830
1
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5
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2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.8 years ago by • 0 • written 14.5 years ago by ▴ 60
1
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5
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1.7k
views
Linear model after imputation (impute.knn function)
impute
updated 8.9 years ago by 50k • written 8.9 years ago by ▴ 10
0
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3
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3.5k
views
Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by ▴ 80
0
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2
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1.3k
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Tigre Package question 3
Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess
updated 10.2 years ago by ▴ 60 • written 10.2 years ago by ▴ 50
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966
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FW: Tigre Package question 3
impute PROcess mmgmos puma impute PROcess mmgmos puma
10.2 years ago Solanki, Anisha ▴ 60
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2.1k
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sva/ComBat with missing values?
impute impute
10.6 years ago W. Evan Johnson ▴ 850
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3
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1.4k
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Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ★ 3.0k
0
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3
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2.9k
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Error installing impute package
impute impute
updated 11.0 years ago by ▴ 870 • written 11.0 years ago by ★ 3.0k
0
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1
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1.9k
views
impute package
impute impute
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 10
0
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1
reply
2.9k
views
Error using impute.knn function
Microarray Normalization impute Microarray Normalization impute
11.8 years ago Peter Davidsen ▴ 210
0
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2
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1.4k
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Error when using impute to get missing values
impute ArrayExpress impute ArrayExpress
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 10
0
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1
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1.3k
views
impute.knn
impute impute
updated 12.2 years ago by ★ 4.2k • written 12.2 years ago by ▴ 290
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2
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6.0k
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impute package
impute BiocInstaller impute BiocInstaller
updated 12.2 years ago by 25k • written 12.2 years ago by ▴ 10
0
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1
reply
1.3k
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
0
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4
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2.1k
views
How is fold change reported in the samr output?
siggenes impute siggenes impute
updated 13.6 years ago by 65k • written 13.6 years ago by ▴ 20
0
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0
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1.1k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.2 years ago Daniel Rico ▴ 110
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0
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897
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pcaMethods and categorical NAs
impute impute
14.3 years ago Antoni Picornell ▴ 40
0
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2
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2.3k
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Genotype imputation
impute impute
updated 14.5 years ago by ▴ 270 • written 14.5 years ago by ▴ 40
0
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2
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1.4k
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A list, a matrix and impute.knn for making data for SAMR
Microarray impute Microarray impute
updated 14.7 years ago by ▴ 60 • written 14.7 years ago by ▴ 90
0
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2
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1.1k
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How to display chromosome rapresentation ?
CGH impute CGH impute
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 540
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0
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1.6k
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when to impute the missing value?
impute pcaMethods impute pcaMethods
16.5 years ago De-Jian ZHAO ▴ 240
0
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1
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1.0k
views
Analysis of many Flagged spots
limma impute limma impute
updated 16.6 years ago by ▴ 40 • written 16.7 years ago by ★ 1.9k
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1
reply
1.2k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
16.8 years ago Benjamin Otto ▴ 830
0
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0
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1.0k
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verification
GO limma impute oligo makePlatformDesign crlmm GO limma impute oligo makePlatformDesign
17.1 years ago Vasiliki Xiarchou ▴ 10
0
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3
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1.1k
views
Unable to compile the impute package on debian with gcc 4.1
Cancer impute Cancer impute
updated 17.1 years ago by ▴ 60 • written 17.1 years ago by ★ 7.4k
0
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0
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949
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Unable to compile the impute package on debian with gcc 4.1
impute impute
17.2 years ago Sebastian Bauer ▴ 60
0
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2
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1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
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0
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1.1k
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aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.4 years ago Sean Davis 21k
0
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2
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1.7k
views
knn.imput and prcomp error
Microarray impute Microarray impute
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 30
0
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0
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967
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Re: Re: segmentation error in pamr.knnimpute
pamr impute pamr impute
19.0 years ago Alice Le Bars ▴ 40
0
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1
reply
1.8k
views
problem with impute.knn in the impute package
Clustering impute Clustering impute
updated 19.0 years ago by ▴ 360 • written 19.0 years ago by ▴ 150
0
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0
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1.1k
views
problem with impute.knn in the impute package
Clustering impute Clustering impute
19.0 years ago He, Yiwen NIH/CIT ▴ 360
0
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0
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1.3k
views
Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
0
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3
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1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.2 years ago madman@jimmy.harvard.edu ▴ 850
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2
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1.2k
views
Handling Missing Values
impute impute
updated 21.5 years ago by ★ 1.0k • written 21.5 years ago by ▴ 110
44 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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