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inSilicoMerging
•
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4
votes
8
replies
1.8k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
8.6 years ago
svlachavas
▴ 830
0
votes
6
replies
2.3k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
Li Liu
▴ 100
0
votes
1
reply
1.3k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 9.9 years ago by
Quentin De Clerck
▴ 10 • written 9.9 years ago by
François Lefebvre
▴ 50
1
vote
5
replies
1.8k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 8.9 years ago by
Matthew McCall
▴ 830 • written 8.9 years ago by
svlachavas
▴ 830
0
votes
2
replies
1.5k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
10.8 years ago
Ed Siefker
▴ 230
6
votes
4
replies
4.0k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
svlachavas
▴ 830
1
vote
2
replies
2.3k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
8.7 years ago
alakatos
▴ 130
0
votes
3
replies
1.6k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.0 years ago by
James W. MacDonald
65k • written 8.0 years ago by
Shamim Sarhadi
▴ 20
1
vote
3
replies
1.1k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
Adam_M
• 0
0
votes
0
replies
927
views
problem with insilicoMerging
insilicomerging
8.8 years ago
carol white
▴ 680
0
votes
0
replies
631
views
table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.0 years ago
pratikshasharma47
• 0
0
votes
1
reply
1.3k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.2 years ago
andreas.pittroff
• 0
0
votes
0
replies
1.1k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
9.4 years ago
Li Liu
▴ 100
13 results • Page
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Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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