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indel
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PureCN can classify indel variants as germline vs. somatic ?
PureCN
indel
somatic
germline
updated 6.8 years ago by
markus.riester
▴ 130 • written 6.8 years ago by
pathkim
• 0
1
vote
2
replies
1.0k
views
Locating enhancers that are mutated
snv
granges
genomicranges
variantannotation
indel
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
addyS
• 0
0
votes
1
reply
845
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
oliwindram
▴ 10
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.7 years ago by
xiaojing.wang
▴ 50 • written 8.7 years ago by
kristenbeck527
• 0
1
vote
0
replies
1.3k
views
Genome editing analysis with Illumina sequencing
indel
sequencing
alignment
8.9 years ago
Merienne Nicolas
▴ 120
2
votes
2
replies
1.2k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 9.4 years ago by
Wei Shi
★ 3.6k • written 9.4 years ago by
daniel.silvestre
▴ 100
6
votes
11
replies
2.9k
views
Comparing read sequence back to reference sequence
bam
indel
genomicalignments
biostrings
updated 9.4 years ago by
Nathaniel Hayden
▴ 180 • written 9.4 years ago by
Stefanie Tauber
▴ 40
7 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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