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indel
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2
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3
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1.2k
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PureCN can classify indel variants as germline vs. somatic ?
PureCN
indel
somatic
germline
updated 6.9 years ago by
markus.riester
▴ 130 • written 6.9 years ago by
pathkim
• 0
1
vote
2
replies
1.0k
views
Locating enhancers that are mutated
snv
granges
genomicranges
variantannotation
indel
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
addyS
• 0
0
votes
1
reply
861
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
oliwindram
▴ 10
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.8 years ago by
xiaojing.wang
▴ 50 • written 8.8 years ago by
kristenbeck527
• 0
1
vote
0
replies
1.3k
views
Genome editing analysis with Illumina sequencing
indel
sequencing
alignment
9.0 years ago
Merienne Nicolas
▴ 120
6
votes
11
replies
2.9k
views
Comparing read sequence back to reference sequence
bam
indel
genomicalignments
biostrings
updated 9.4 years ago by
Nathaniel Hayden
▴ 180 • written 9.4 years ago by
Stefanie Tauber
▴ 40
2
votes
2
replies
1.2k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 9.4 years ago by
Wei Shi
★ 3.6k • written 9.4 years ago by
daniel.silvestre
▴ 100
7 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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