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infrastructure
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0
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10
replies
2.4k
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
11.1 years ago
Julie Zhu
★ 4.3k
0
votes
5
replies
4.6k
views
Finding mismatches between reads and reference sequence
Infrastructure
Cancer
BSgenome
BSgenome
Infrastructure
Cancer
BSgenome
BSgenome
updated 11.0 years ago by
David Greber
▴ 30 • written 11.0 years ago by
Hervé Pagès
16k
1
vote
4
replies
4.7k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure
cdf
probe
affy
Infrastructure
cdf
probe
affy
16.0 years ago • updated 15.9 years ago
Hans-Ulrich Klein
▴ 330
0
votes
5
replies
3.3k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 10.1 years ago by
Julian Gehring
★ 1.3k • written 10.1 years ago by
enricoferrero
▴ 660
0
votes
2
replies
2.5k
views
counting RNA-seq reads in R/BioC
GO
Infrastructure
Rsubread
easyRNASeq
GO
Infrastructure
Rsubread
easyRNASeq
updated 11.6 years ago by
Valerie Obenchain
★ 6.8k • written 11.6 years ago by
Mark Robinson
▴ 880
0
votes
5
replies
1.6k
views
extracting interactions between members of the KEGG pathways
Pathways
Infrastructure
Cancer
graph
Pathways
Infrastructure
Cancer
graph
updated 18.1 years ago by
rgentleman
★ 5.5k • written 18.1 years ago by
Jane Fridlyand
▴ 90
0
votes
5
replies
1.1k
views
pooling for parallel hierarchical operations
Infrastructure
Infrastructure
updated 11.4 years ago by
Martin Morgan
25k • written 11.4 years ago by
Michael Lawrence
★ 11k
0
votes
8
replies
1.9k
views
good news and bad news
Infrastructure
Cancer
IRanges
GenomicRanges
Infrastructure
Cancer
IRanges
GenomicRanges
updated 11.7 years ago by
Steve Lianoglou
★ 13k • written 11.7 years ago by
Hervé Pagès
16k
0
votes
7
replies
2.2k
views
Bioconductor 2.6 is released
Sequencing
Microarray
Visualization
Infrastructure
PROcess
beadarray
keggorthology
eisa
updated 7.7 years ago by
wangyizhusss
• 0 • written 14.0 years ago by
Patrick Aboyoun
★ 1.6k
0
votes
2
replies
1.0k
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 10.7 years ago by
Tim Triche
★ 4.2k • written 10.7 years ago by
Michael Lawrence
★ 11k
0
votes
2
replies
960
views
"internal equal" overlap mode for GRangesList
Infrastructure
Infrastructure
updated 12.5 years ago by
Malcolm Cook
★ 1.6k • written 12.5 years ago by
Michael Lawrence
★ 11k
1
vote
3
replies
2.6k
views
deseq2 DESeqDataSet size when saved
deseq2
infrastructure
deseqdataset
importing
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
eric.blanc
• 0
0
votes
1
reply
1.1k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival
Infrastructure
Cancer
hexbin
prada
rfcdmin
rflowcyt
Survival
Infrastructure
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
Ulrik Stervbo
▴ 80
0
votes
5
replies
1.3k
views
A code kata: evening-out *Ranges ends.
Infrastructure
Cancer
IRanges
Infrastructure
Cancer
IRanges
13.7 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.3k
views
BioC 2.2 now available
SNP
Microarray
Genetics
Annotation
Preprocessing
Bayesian
Clustering
Infrastructure
Cancer
updated 16.0 years ago by
Patrick Aboyoun
★ 1.6k • written 16.0 years ago by
Martin Morgan
25k
0
votes
2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
2
replies
1.5k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.1 years ago by
Neel Aluru
▴ 460
0
votes
1
reply
958
views
convert IDs in a data frame?
GO
Infrastructure
Cancer
GO
Infrastructure
Cancer
updated 10.7 years ago by
Marc Carlson
★ 7.2k • written 10.7 years ago by
Hervé Pagès
16k
0
votes
4
replies
1.8k
views
DexSeq extracols option
RNASeq
Microarray
Genetics
Annotation
Normalization
Infrastructure
Cancer
probe
limma
updated 10.7 years ago by
Alejandro Reyes
★ 1.9k • written 10.7 years ago by
Ioannis Vlachos
▴ 40
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO
Infrastructure
hgu95av2
Biobase
Ruuid
AnnotationDbi
GO
Infrastructure
hgu95av2
Biobase
updated 15.9 years ago by
Martin Morgan
25k • written 15.9 years ago by
Vladimir Morozov
▴ 130
0
votes
1
reply
849
views
Project Enquiry!
Infrastructure
Infrastructure
15.7 years ago
Kat
▴ 20
0
votes
1
reply
793
views
The bioconductor.org main website will be down for a brief period for maintenance. Starting approximately 7:45 am EST. Should be back up around 8:00 …
infrastructure
7.3 years ago
gregory.wargula
▴ 30
4
votes
1
reply
2.6k
views
News:
Bioconductor git transition BETA phase starts now.
git
svn
infrastructure
bioconductor
News
6.8 years ago
nitesh.turaga
▴ 140
0
votes
0
replies
1.2k
views
Bioinformatics Position Opening
Proteomics
Infrastructure
Proteomics
Infrastructure
11.3 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.3k
views
Open computational biologist position at Genentech
Infrastructure
Infrastructure
11.3 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.3k
views
Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure
Infrastructure
11.1 years ago
Jan T Kim
▴ 50
0
votes
0
replies
1.6k
views
Bioconductor Digest, Vol 121, Issue 29
miRNA
Annotation
Normalization
Visualization
Clustering
Infrastructure
Cancer
BSgenome
vsn
11.1 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
1.2k
views
Reopening of Computational Biologist position at Genentech
Infrastructure
PROcess
Infrastructure
PROcess
10.7 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.4k
views
Bioinformatics Facility Director Position at UC Riverside
Proteomics
Infrastructure
Proteomics
Infrastructure
10.6 years ago
Thomas Girke
★ 1.7k
3
votes
0
replies
1.7k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
8.8 years ago • updated 8.7 years ago
Matthew Ritchie
▴ 1000
1
vote
0
replies
1.5k
views
News:
BioCAsia, 4th November 2016, Brisbane, Australia
conference
transcription
epigenomics
visualization
infrastructure
News
7.8 years ago
Matthew Ritchie
▴ 1000
0
votes
0
replies
1.3k
views
BioC 1.9 is released!
BiocViews
SNP
Microarray
Annotation
Normalization
Visualization
Network
Infrastructure
SNP
17.6 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
652
views
News:
Single Package Builder / New Package Submission
new package
build machines
infrastructure
News
3.9 years ago
shepherl
3.8k
0
votes
0
replies
1.5k
views
Bioinformatics Academic Coordinator Job Posting
Proteomics
Infrastructure
Proteomics
Infrastructure
11.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.6k
views
Bioinformatician Job at Pirbright Institute
Genetics
Infrastructure
Genetics
Infrastructure
11.4 years ago
Jan T Kim
▴ 50
0
votes
0
replies
1.8k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
10.3 years ago
Holger Klein
▴ 20
0
votes
0
replies
654
views
[BioCTrain] announcement: training option Boston May 2003
Preprocessing
Infrastructure
oligo
Preprocessing
Infrastructure
oligo
21.1 years ago
Vincent Carey
▴ 10
0
votes
0
replies
1.2k
views
S+ArrayAnalyzer and BioConductor Announcement
Microarray
SAGE
Annotation
Infrastructure
Microarray
SAGE
Annotation
Infrastructure
19.8 years ago
MOConnell@insightful.com
▴ 20
0
votes
0
replies
2.1k
views
Prestigious Research Fellowship in Biostatistics/Bioinformatics
Microarray
Survival
Infrastructure
Cancer
Breast
bridge
Microarray
Survival
Infrastructure
19.8 years ago
Wei, Wenbin
▴ 50
0
votes
0
replies
629
views
100K SNP chips for linkage
SNP
Microarray
Infrastructure
Cancer
affy
SNP
Microarray
Infrastructure
Cancer
affy
18.9 years ago
James W. MacDonald
65k
0
votes
0
replies
926
views
Job: Computational Biology Group at FHCRC is hiring
Infrastructure
Cancer
PROcess
Infrastructure
Cancer
PROcess
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
876
views
[OT] Biostatistician position available
Microarray
Infrastructure
Microarray
Infrastructure
18.6 years ago
Diego Diez
▴ 760
0
votes
0
replies
864
views
Cel -> MAGE-ML
Infrastructure
affy
RMAGEML
Infrastructure
affy
RMAGEML
18.4 years ago
Steffen Durinck
▴ 420
0
votes
0
replies
1.0k
views
2x2 factorial with dye effect, limma design
Microarray
Infrastructure
Microarray
Infrastructure
17.3 years ago
Gordon Smyth
50k
0
votes
0
replies
618
views
question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation
Infrastructure
Cancer
Annotation
Infrastructure
Cancer
16.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.2k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure
PROcess
Infrastructure
PROcess
16.4 years ago
kchine@ebi.ac.uk
▴ 10
0
votes
0
replies
821
views
To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure
biomaRt
Infrastructure
biomaRt
16.1 years ago
Steffen
▴ 500
0
votes
0
replies
907
views
Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure
Infrastructure
15.7 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
GSEA to discover co-regulated genes
Transcription
Annotation
Pathways
Infrastructure
probe
convert
GSEABase
Transcription
15.2 years ago
Paul Geeleher
★ 1.3k
50 results • Page
1 of 1
Recent ...
Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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to
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65k
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3.8k
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