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infrastructure
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0
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10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
11.0 years ago
Julie Zhu
★ 4.3k
0
votes
8
replies
1.9k
views
good news and bad news
Infrastructure
Cancer
IRanges
GenomicRanges
Infrastructure
Cancer
IRanges
GenomicRanges
updated 11.6 years ago by
Steve Lianoglou
★ 13k • written 11.6 years ago by
Hervé Pagès
16k
0
votes
7
replies
2.2k
views
Bioconductor 2.6 is released
Sequencing
Microarray
Visualization
Infrastructure
PROcess
beadarray
keggorthology
eisa
updated 7.6 years ago by
wangyizhusss
• 0 • written 13.9 years ago by
Patrick Aboyoun
★ 1.6k
0
votes
5
replies
3.3k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 10.0 years ago by
Julian Gehring
★ 1.3k • written 10.0 years ago by
enricoferrero
▴ 660
0
votes
5
replies
1.6k
views
extracting interactions between members of the KEGG pathways
Pathways
Infrastructure
Cancer
graph
Pathways
Infrastructure
Cancer
graph
updated 18.0 years ago by
rgentleman
★ 5.5k • written 18.0 years ago by
Jane Fridlyand
▴ 90
0
votes
5
replies
1.3k
views
A code kata: evening-out *Ranges ends.
Infrastructure
Cancer
IRanges
Infrastructure
Cancer
IRanges
13.6 years ago
Steve Lianoglou
★ 13k
0
votes
5
replies
4.5k
views
Finding mismatches between reads and reference sequence
Infrastructure
Cancer
BSgenome
BSgenome
Infrastructure
Cancer
BSgenome
BSgenome
updated 11.0 years ago by
David Greber
▴ 30 • written 11.0 years ago by
Hervé Pagès
16k
0
votes
5
replies
1.0k
views
pooling for parallel hierarchical operations
Infrastructure
Infrastructure
updated 11.4 years ago by
Martin Morgan
25k • written 11.4 years ago by
Michael Lawrence
★ 11k
0
votes
4
replies
1.7k
views
DexSeq extracols option
RNASeq
Microarray
Genetics
Annotation
Normalization
Infrastructure
Cancer
probe
limma
updated 10.7 years ago by
Alejandro Reyes
★ 1.9k • written 10.7 years ago by
Ioannis Vlachos
▴ 40
1
vote
4
replies
4.6k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure
cdf
probe
affy
Infrastructure
cdf
probe
affy
15.9 years ago
Hans-Ulrich Klein
▴ 330
1
vote
3
replies
2.5k
views
deseq2 DESeqDataSet size when saved
deseq2
infrastructure
deseqdataset
importing
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
eric.blanc
• 0
0
votes
2
replies
947
views
"internal equal" overlap mode for GRangesList
Infrastructure
Infrastructure
updated 12.4 years ago by
Malcolm Cook
★ 1.6k • written 12.4 years ago by
Michael Lawrence
★ 11k
0
votes
2
replies
2.5k
views
counting RNA-seq reads in R/BioC
GO
Infrastructure
Rsubread
easyRNASeq
GO
Infrastructure
Rsubread
easyRNASeq
updated 11.6 years ago by
Valerie Obenchain
★ 6.8k • written 11.5 years ago by
Mark Robinson
▴ 880
0
votes
2
replies
991
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 10.6 years ago by
Tim Triche
★ 4.2k • written 10.6 years ago by
Michael Lawrence
★ 11k
0
votes
2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Shields, Rusty IMS
▴ 40
0
votes
2
replies
1.5k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.1 years ago by
Neel Aluru
▴ 460
0
votes
1
reply
945
views
convert IDs in a data frame?
GO
Infrastructure
Cancer
GO
Infrastructure
Cancer
updated 10.7 years ago by
Marc Carlson
★ 7.2k • written 10.7 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.2k
views
BioC 2.2 now available
SNP
Microarray
Genetics
Annotation
Preprocessing
Bayesian
Clustering
Infrastructure
Cancer
updated 15.9 years ago by
Patrick Aboyoun
★ 1.6k • written 15.9 years ago by
Martin Morgan
25k
0
votes
1
reply
1.1k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival
Infrastructure
Cancer
hexbin
prada
rfcdmin
rflowcyt
Survival
Infrastructure
updated 17.8 years ago by
Seth Falcon
★ 7.4k • written 17.8 years ago by
Ulrik Stervbo
▴ 80
0
votes
1
reply
1.3k
views
GSEABase error in parsing msigdb_v2.5.xml
GO
Infrastructure
hgu95av2
Biobase
Ruuid
AnnotationDbi
GO
Infrastructure
hgu95av2
Biobase
updated 15.9 years ago by
Martin Morgan
25k • written 15.9 years ago by
Vladimir Morozov
▴ 130
0
votes
1
reply
841
views
Project Enquiry!
Infrastructure
Infrastructure
15.6 years ago
Kat
▴ 20
0
votes
1
reply
785
views
The bioconductor.org main website will be down for a brief period for maintenance. Starting approximately 7:45 am EST. Should be back up around 8:00 …
infrastructure
7.2 years ago
gregory.wargula
▴ 30
4
votes
1
reply
2.5k
views
News:
Bioconductor git transition BETA phase starts now.
git
svn
infrastructure
bioconductor
News
6.7 years ago
nitesh.turaga
▴ 140
0
votes
0
replies
1.2k
views
Bioinformatics Position Opening
Proteomics
Infrastructure
Proteomics
Infrastructure
11.2 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.3k
views
Open computational biologist position at Genentech
Infrastructure
Infrastructure
11.2 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.3k
views
Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure
Infrastructure
11.0 years ago
Jan T Kim
▴ 50
0
votes
0
replies
1.6k
views
Bioconductor Digest, Vol 121, Issue 29
miRNA
Annotation
Normalization
Visualization
Clustering
Infrastructure
Cancer
BSgenome
vsn
11.0 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
1.1k
views
Reopening of Computational Biologist position at Genentech
Infrastructure
PROcess
Infrastructure
PROcess
10.6 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.4k
views
Bioinformatics Facility Director Position at UC Riverside
Proteomics
Infrastructure
Proteomics
Infrastructure
10.5 years ago
Thomas Girke
★ 1.7k
3
votes
0
replies
1.7k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
8.8 years ago • updated 8.6 years ago
Matthew Ritchie
▴ 1000
1
vote
0
replies
1.5k
views
News:
BioCAsia, 4th November 2016, Brisbane, Australia
conference
transcription
epigenomics
visualization
infrastructure
News
7.7 years ago
Matthew Ritchie
▴ 1000
0
votes
0
replies
1.3k
views
BioC 1.9 is released!
BiocViews
SNP
Microarray
Annotation
Normalization
Visualization
Network
Infrastructure
SNP
17.5 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
636
views
News:
Single Package Builder / New Package Submission
new package
build machines
infrastructure
News
3.8 years ago
shepherl
3.8k
0
votes
0
replies
1.5k
views
Bioinformatics Academic Coordinator Job Posting
Proteomics
Infrastructure
Proteomics
Infrastructure
11.7 years ago
Guest User
★ 13k
0
votes
0
replies
1.6k
views
Bioinformatician Job at Pirbright Institute
Genetics
Infrastructure
Genetics
Infrastructure
11.3 years ago
Jan T Kim
▴ 50
0
votes
0
replies
1.8k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
10.2 years ago
Holger Klein
▴ 20
0
votes
0
replies
644
views
[BioCTrain] announcement: training option Boston May 2003
Preprocessing
Infrastructure
oligo
Preprocessing
Infrastructure
oligo
21.1 years ago
Vincent Carey
▴ 10
0
votes
0
replies
1.2k
views
S+ArrayAnalyzer and BioConductor Announcement
Microarray
SAGE
Annotation
Infrastructure
Microarray
SAGE
Annotation
Infrastructure
19.8 years ago
MOConnell@insightful.com
▴ 20
0
votes
0
replies
2.1k
views
Prestigious Research Fellowship in Biostatistics/Bioinformatics
Microarray
Survival
Infrastructure
Cancer
Breast
bridge
Microarray
Survival
Infrastructure
19.8 years ago
Wei, Wenbin
▴ 50
0
votes
0
replies
615
views
100K SNP chips for linkage
SNP
Microarray
Infrastructure
Cancer
affy
SNP
Microarray
Infrastructure
Cancer
affy
18.8 years ago
James W. MacDonald
65k
0
votes
0
replies
919
views
Job: Computational Biology Group at FHCRC is hiring
Infrastructure
Cancer
PROcess
Infrastructure
Cancer
PROcess
18.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
869
views
[OT] Biostatistician position available
Microarray
Infrastructure
Microarray
Infrastructure
18.5 years ago
Diego Diez
▴ 760
0
votes
0
replies
849
views
Cel -> MAGE-ML
Infrastructure
affy
RMAGEML
Infrastructure
affy
RMAGEML
18.4 years ago
Steffen Durinck
▴ 420
0
votes
0
replies
1.0k
views
2x2 factorial with dye effect, limma design
Microarray
Infrastructure
Microarray
Infrastructure
17.2 years ago
Gordon Smyth
50k
0
votes
0
replies
607
views
question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation
Infrastructure
Cancer
Annotation
Infrastructure
Cancer
16.6 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.2k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure
PROcess
Infrastructure
PROcess
16.4 years ago
kchine@ebi.ac.uk
▴ 10
0
votes
0
replies
808
views
To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure
biomaRt
Infrastructure
biomaRt
16.1 years ago
Steffen
▴ 500
0
votes
0
replies
898
views
Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure
Infrastructure
15.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.3k
views
GSEA to discover co-regulated genes
Transcription
Annotation
Pathways
Infrastructure
probe
convert
GSEABase
Transcription
15.2 years ago
Paul Geeleher
★ 1.3k
50 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
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Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
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